Publications by authors named "Timothy M Uyeki"

Antiviral therapy is underutilized for outpatients at increased risk for severe COVID-19 or influenza. Results from this survey offer insights into treatment barriers from the infectious disease specialist perspective. Further education is needed about the benefits of early antiviral therapy.

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Congregate homeless shelters are disproportionately affected by infectious disease outbreaks. We describe enterovirus epidemiology across 23 adult and family shelters in King County, Washington, USA, during October 2019-May 2021, by using repeated cross-sectional respiratory illness and environmental surveillance and viral genome sequencing. Among 3,281 participants >3 months of age, we identified coxsackievirus A21 (CVA21) in 39 adult residents (3.

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  • - Since 2013, there have been 167 cases of people infected with special flu viruses from pigs in the U.S. called swine-origin influenza A.
  • - Most of these viruses had a change in their genes that makes them resistant to certain medicines, but none were resistant to another type of medicine called neuraminidase inhibitors.
  • - Scientists did tests to find out how well these viruses respond to treatments and discovered that one specific change in the virus made it much harder to treat with a medicine called baloxavir.
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  • The highly pathogenic avian influenza (HPAI) A(H5N1) virus, clade 2.3.4.4b, has been spreading among birds and causing outbreaks in various animal species since 2021.
  • In 2024, this strain was found in dairy cattle, leading to a significant outbreak and high levels of the virus in raw cow milk.
  • Human infections from this virus can range from mild symptoms to severe illnesses, highlighting the need for improved global surveillance and rapid data sharing to address the evolving threat to public health.
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  • Antiviral medications can help prevent influenza after exposure, especially neuraminidase inhibitors, which are effective but the success of other antivirals is less clear.
  • Researchers reviewed and analyzed many studies to see how well different antivirals worked at stopping flu and keeping people safe after they might have been infected.
  • They found that some antivirals, like zanamivir and oseltamivir, can significantly reduce the chances of getting symptomatic influenza in people who are at high risk for getting seriously sick.
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  • The study analyzed the effectiveness of antiviral drugs for treating severe influenza to aid in updating WHO clinical guidelines.
  • Researchers searched various medical databases for randomized controlled trials involving hospitalized patients to compare antiviral medications against placebos and other treatments.
  • Eight trials were ultimately included, with a total of 1,424 participants, leading to a network meta-analysis focusing on key outcomes like symptom alleviation time, hospitalization duration, and mortality rates.
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  • Pneumonia is frequent among adults hospitalized with confirmed influenza, but the impact of how quickly antiviral treatment is given on severe outcomes is not well understood.
  • The study analyzed data from over 26,000 adults hospitalized between 2012-2019 to see how the timing of antiviral treatment (given on the day of admission vs. later) affected 30-day mortality rates.
  • Results showed that those who received treatment later (days 2-5) had a significantly higher risk of death compared to those treated on the same day of admission, emphasizing the need for prompt treatment.
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  • The study investigated how acute respiratory illness (ARI) impacted school, work attendance, and nonpharmaceutical interventions (NPI) before and during the COVID-19 pandemic, using data collected from families in King County, Washington.
  • Researchers monitored ARI symptoms weekly from November 2019 to June 2021 and analyzed how these symptoms affected behaviors, finding notable shifts in NPI use, particularly during the pre-vaccine phase of the pandemic.
  • Results showed a significant decrease in school absenteeism during the pandemic, alongside a marked increase in masking and other NPIs, but no additional disruptions related to illness at school or work beyond what was observed pre-pandemic.
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  • The study tracks changes in patient characteristics and medical care for those hospitalized with severe acute respiratory infections during different COVID-19 pandemic phases in the U.S.
  • It involves a longitudinal cohort study of 874 patients across multiple hospitals, focusing on demographics, health conditions, and treatment outcomes corresponding to different SARS-CoV-2 variants.
  • The findings highlight the evolution of patient outcomes and emphasize the need for a continuous clinical network to better understand both known and new respiratory viral diseases.
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Introduction: Mounting evidence indicates that an individual's humoral adaptive immune response plays a critical role in the setting of SARS-CoV-2 infection, and that the efficiency of the response correlates with disease severity. The relationship between the adaptive immune dynamics in the lower airways with those in the systemic circulation, and how these relate to an individual's clinical response to SARS-CoV-2 infection, are less understood and are the focus of this study.

Material And Methods: We investigated the adaptive immune response to SARS-CoV-2 in paired samples from the lower airways and blood from 27 critically ill patients during the first wave of the pandemic (median time from symptom onset to intubation 11 days).

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Background: Although antivirals remain important for the treatment COVID-19, methods to assess treatment efficacy are lacking. Here, we investigated the impact of remdesivir on viral dynamics and their contribution to understanding antiviral efficacy in the multicenter Adaptive COVID-19 Treatment Trial 1, which randomized patients to remdesivir or placebo.

Methods: Longitudinal specimens collected during hospitalization from a substudy of 642 patients with COVID-19 were measured for viral RNA (upper respiratory tract and plasma), viral nucleocapsid antigen (serum), and host immunologic markers.

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  • A study conducted at a public university in Seattle evaluated the effectiveness of SARS-CoV-2 antigen-detection rapid diagnostic tests (Ag-RDTs) in comparison to traditional rRT-PCR testing over a period from February to December 2022.
  • Out of 5,757 participants, those who took 12,674 rRT-PCR tests found 7.9% positive, with Ag-RDTs showing an overall sensitivity of 53% and specificity of 98.8%.
  • The study concluded that Ag-RDT sensitivity improved with sequential testing, particularly after initial negative results, and recommended repeat testing for symptomatic individuals or those at high risk.
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Background: Early during the COVID-19 pandemic, it was important to better understand transmission dynamics of SARS-CoV-2, the virus that causes COVID-19. Household contacts of infected individuals are particularly at risk for infection, but delays in contact tracing, delays in testing contacts, and isolation and quarantine posed challenges to accurately capturing secondary household cases.

Methods: In this study, 346 households in the Seattle region were provided with respiratory specimen collection kits and remotely monitored using web-based surveys for respiratory illness symptoms weekly between October 1, 2020, and June 20, 2021.

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Vaccine effectiveness (VE) studies utilizing the test-negative design are typically conducted in clinical settings, rather than community populations, leading to bias in VE estimates against mild disease and limited information on VE in healthy young adults. In a community-based university population, we utilized data from a large SARS-CoV-2 testing program to estimate relative VE of COVID-19 mRNA vaccine primary series and monovalent booster dose versus primary series only against symptomatic SARS-CoV-2 infection from September 2021 to July 2022. We used the test-negative design and logistic regression implemented via generalized estimating equations adjusted for age, calendar time, prior SARS-CoV-2 infection, and testing frequency (proxy for test-seeking behavior) to estimate relative VE.

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  • The study aimed to assess real-time rRT-PCR results for detecting avian influenza A virus (AIV) in live bird markets in Dhaka, Bangladesh, focusing on workers' respiratory samples.
  • Over the research period, they found that a small percentage of symptomatic workers tested positive for A(H5) and A(H9), while positive results were also noted among asymptomatic workers, particularly from arm swabs.
  • The results highlighted that the presence of AIV RNA in the workers' specimens, without seroconversion evidence, indicates environmental contamination rather than active infection, stressing the need for careful result interpretation in areas with high viral loads.
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  • - The study examined how infections with one respiratory virus influence the likelihood of subsequent infections with the same or different viruses, noting the complexity of viral interactions.
  • - Conducted between October 2019 and June 2021, the research involved active surveillance of acute respiratory illnesses, where participants self-collected nasal swabs for analysis of various respiratory viruses using advanced testing methods.
  • - Findings revealed that primary viral infections, especially with rhinovirus, significantly increased the risk of detecting additional respiratory viruses within 90 days, highlighting the interconnected nature of viral respiratory infections.
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Background: Respiratory viruses might influence nasal carriage and subsequent disease risk. We estimated the association between common respiratory viruses and semiquantitative nasal carriage density in a household setting before and during the COVID-19 pandemic.

Methods: From November 2019-June 2021, we enrolled participants in a remote household surveillance study of respiratory pathogens.

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