Publications by authors named "Thumbi Ndungʼu"

This target product profile (TPP) highlights the minimal and optimal characteristics for ex-vivo and in-vivo cell and gene therapy-based products aimed at achieving an HIV cure (ie, durable antiretroviral-free viral control). The need for an effective, safe, scalable, affordable, accessible, and acceptable cure for HIV infection remains a major global priority. The possibilities for cell and gene therapy-based products for an HIV cure are rapidly expanding.

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There are many dimensions to scientific life. We asked investigators about the impact of service to the scientific community and beyond and how service has shaped their experience, perspective, and research path.

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The complex dynamics of protein expression in plasma during hyperacute HIV-1 infection and its relation to acute retroviral syndrome, viral control, and disease progression are largely unknown. Here, we quantify 1293 blood plasma proteins from 157 longitudinally linked plasma samples collected before, during, and after hyperacute HIV-1 infection of 54 participants from four sub-Saharan African countries. Six distinct longitudinal expression profiles are identified, of which four demonstrate a consistent decrease in protein levels following HIV-1 infection.

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HIV causes susceptibility to respiratory pathogens, including tuberculosis (TB), but the underlying immunological mechanisms remain incompletely understood. We obtained whole blood and bronchoalveolar lavage (BAL) from TB-exposed people in the presence or absence of antiretroviral-naïve HIV co-infection. Bulk transcriptional profiling demonstrated compartment-specific enrichment of immunological processes.

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From the perspective of developing relevant interventions for treating HIV and controlling its spread, it is particularly important to comprehensively understand the underlying diversity of the virus, especially in countries where the virus has been present and evolving since the cross-species transmission event that triggered the global pandemic. Here, we generate and phylogenetically analyse sequences derived from the (2010 bp;  = 115), partial (345 bp;  = 36), and (719 bp;  = 321) genes of HIV-1 group M (HIV-1M) isolates sampled between 2000 and 2022 from two cosmopolitan cities and 40 remote villages of Cameroon. While 52.

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Article Synopsis
  • Bacterial vaginosis (BV) is commonly caused by a lack of beneficial Lactobacillus bacteria and has negative health effects that often persist after standard antibiotic treatments.
  • These antibiotics tend to favor the growth of Lactobacillus iners over the more protective Lactobacillus crispatus, highlighting the need for strategies to support L. crispatus growth.
  • Research shows that oleic acid and similar fatty acids can inhibit L. iners while promoting L. crispatus, working through specific genes involved in fatty acid metabolism, suggesting that oleic acid could be a more effective treatment for BV than traditional antibiotics.
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Analytical treatment interruption (ATI) is widely acknowledged as an essential component of studies to advance our understanding of HIV cure, but discussion has largely been focused on adults. To address this gap, we reviewed evidence related to the safety and utility of ATI in paediatric populations. Three randomised ATI trials using CD4 T-cell and clinical criteria to guide restart of antiretroviral therapy (ART) have been conducted.

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Background: Persisting HIV reservoir viruses in resting CD4 T cells and other cellular subsets are the main barrier to cure efforts. Antiretroviral therapy (ART) intensification by early initiation has been shown to enable post-treatment viral control in some cases but the underlying mechanisms are not fully understood. We hypothesized that ART initiated during the hyperacute phase of infection before peak will affect the size, decay dynamics and landscape characteristics of HIV-1 subtype C viral reservoirs.

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Background: Strategies toward HIV-1 cure aim to clear, inactivate, reduce, or immunologically control the virus from a pool of latently infected cells such that combination antiretroviral therapy (cART) can be safely interrupted. In order to assess the impact of any putative curative interventions on the size and inducibility of the latent HIV-1 reservoir, robust and scalable assays are needed to precisely quantify the frequency of infected cells containing inducible HIV-1.

Methods: We developed Specific Quantification of Inducible HIV-1 by RT-LAMP (SQuHIVLa), leveraging the high sensitivity and specificity of RT-LAMP, performed in a single reaction, to detect and quantify cells expressing tat/rev HIV-1 multiply spliced RNA (msRNA) upon activation.

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HIV-1 group M (HIV-1M) lineages downregulate HLA-I and CD4 expression via their Nef proteins. We hypothesized that these Nef functions may be partially responsible for the differences in prevalence of viruses from different lineages that co-circulate within an epidemic. Here, we characterized these two Nef activities in HIV-1M isolates from Cameroon, where multiple variants have been circulating since the pandemic's origin.

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  • Researchers studied 284 young children in South Africa who started HIV treatment early to see how well they could control the virus after treatment.
  • About 84% of these kids managed to hide the virus while on treatment, but only 32% were still virus-free after more than 3 years.
  • Some boys were able to stay virus-free even after stopping their treatment for months, which might be linked to differences in how boys and girls' immune systems respond to the virus.
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  • Expanded antiretroviral therapy (ART) in South Africa has not eliminated HIV-1 transmission, which is concerning despite new treatment options like integrase strand transfer inhibitors (INSTIs) and long-acting injectables.
  • A community-based study in rural KwaZulu-Natal enrolled 18,025 individuals to analyze HIV-1 drug resistance and identify transmission networks, revealing that one-third were HIV-positive and that 62.1% of those with detectable viral loads had never received ART.
  • While resistance to older drugs was found, INSTI resistance was low, though there was notable concern over resistance to non-nucleoside reverse transcriptase inhibitors (NNRTIs) in ART-naïve individuals; findings highlight the need
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  • Low- and middle-income countries (LMICs), particularly in Southern and Eastern Africa, face the highest global HIV burden but have limited research efforts focused on HIV cure.
  • *Conducting studies in these regions provides opportunities to develop tailored research strategies, involve local stakeholders, and create impactful policies due to the diverse HIV strains and high prevalence.
  • *Challenges such as lack of funding, mentorship, and infrastructure limit the participation of early-career investigators in HIV cure research, highlighting the need for capacity building and collaboration with international peers.*
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Health-related quality of life (HRQoL) assesses the perceived impact of health status across life domains. Although research has explored the relationship between specific conditions, including HIV, and HRQoL in low-resource settings, less attention has been paid to the association between multimorbidity and HRQoL. In a secondary analysis of cross-sectional data from the Vukuzazi ("Wake up and know ourselves" in isiZulu) study, which identified the prevalence and overlap of non-communicable and infectious diseases in the uMkhanyakunde district of KwaZulu-Natal, we (1) evaluated the impact of multimorbidity on HRQoL; (2) determined the relative associations among infectious diseases, non-communicable diseases (NCDs), and HRQoL; and (3) examined the effects of controlled versus non-controlled disease on HRQoL.

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The WHO African region bears a disproportionate burden of morbidity and mortality related to chronic hepatitis B virus (HBV) infection and accounts for an estimated 70% of new HBV infections worldwide. We investigated the extent to which HBV clinical trials represented populations in this region by searching the WHO International Clinical Trials Registry Platform and ClinicalTrials.gov for interventional clinical trials published in English between database inception and May 29, 2023, using the search term "Hepatitis B".

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One mechanism of variant formation may be evolution during long-term infection in immunosuppressed people. To understand the viral phenotypes evolved during such infection, we tested SARS-CoV-2 viruses evolved from an ancestral B.1 lineage infection lasting over 190 days post-diagnosis in an advanced HIV disease immunosuppressed individual.

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  • The study looked at how certain infections might affect the immune system and make people more likely to get HIV-1, especially in high-risk individuals in Coastal Kenya.
  • Researchers compared people who got HIV-1 to those who did not, checking their exposure to infections like malaria, cytomegalovirus (CMV), and sexually transmitted infections (STIs).
  • They found that while malaria and CMV didn’t seem linked to getting HIV-1, exposure to STIs was linked, and some immune markers were changed in those who got HIV-1 compared to those who didn't.
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Bacterial vaginosis (BV), a common syndrome characterized by -deficient vaginal microbiota, is associated with adverse health outcomes. BV often recurs after standard antibiotic therapy in part because antibiotics promote microbiota dominance by instead of , which has more beneficial health associations. Strategies to promote and inhibit are thus needed.

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Diversity, equity and inclusion (DEI) in science is vital to improve the scientific process and ensure societal uptake and application of scientific results. DEI challenges include a full spectrum of issues from the lack of, and promotion of, women in science, to the numerous barriers in place that limit representation of African scientists in global scientific efforts. DEI principles in African science remain relatively underdeveloped, with limited engagement and discussion among all stakeholders to ensure that initiatives are relevant to local environments.

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  • Despite increased access to HIV treatment in South Africa, new HIV-1 infections are still widespread, prompting a need for more effective therapies like long-acting injectables.
  • A community-based study conducted in KwaZulu-Natal found that out of over 18,000 participants, nearly one-third tested positive for HIV, with significant pre-existing drug resistance observed among treated individuals.
  • The study highlighted the urgency of understanding drug resistance and transmission networks to improve interventions, particularly as certain mutations could limit the effectiveness of new treatment options.
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  • There is a new focus on improving health research in Africa by putting more control in the hands of African leaders and researchers.
  • Experts found that the ways to check and measure how well these research programs are working need to improve, especially in collecting more complete data.
  • Sharing what they learn from measuring these programs can help everyone get better at supporting health research in the future.
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Background: For optimal functionality, immune cells require a robust and adaptable metabolic program that is fueled by dynamic mitochondrial activity. In this study, we investigate the metabolic alterations occurring in immune cells during HIV infection and antiretroviral therapy by analyzing the uptake of metabolic substrates and mitochondrial phenotypes. By delineating changes in immune cell metabolic programming during HIV, we may identify novel potential therapeutic targets to improve anti-viral immune responses.

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Background: Immune dysfunction often persists in people living with human immunodeficiency virus (HIV) who are on antiretroviral therapy (ART), clinically manifesting as HIV-1-associated comorbid conditions. Early ART initiation may reduce incidence of HIV-1-associated immune dysfunction and comorbid conditions. Immunometabolism is a critical determinant of functional immunity.

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