Microbiomes of throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome.

Plant microbiomes are known to serve several important functions for their host, and it is therefore important to understand their composition as well as the factors that may influence these microbial communities. The microbiome of has only recently been explored, and studies to-date have primarily focused on characterizing the microbiome of plants in a single region. Here, we present the first characterization of the composition of the microbial communities of across a wide geographical range spanning three distinct regions with varying physicochemical conditions.

Herbivore effects increase with latitude across the extent of a foundational seagrass.

Climate change is altering the functioning of foundational ecosystems. While the direct effects of warming are expected to influence individual species, the indirect effects of warming on species interactions remain poorly understood. In marine systems, as tropical herbivores undergo poleward range expansion, they may change food web structure and alter the functioning of key habitats.

A tracer model nowcast/forecast study of the Tampa Bay, Piney Point effluent plume: Rapid response to an environmental hazard.

An emergency discharge of nutrient-rich effluent from the defunct Piney Point fertilizer stack into Tampa Bay at Port Manatee occurred from 30 March-8 April 2021. This resulted in a pollutant plume that evolved over time and space across the entire bay, including its environmentally sensitive marine preserves, and out onto the adjacent continental shelf. As a rapid response to environmental concerns, the plume evolution was simulated using the high resolution, unstructured grid, Tampa Bay Coastal Ocean Model (TBCOM) nowcast/forecast system, with an embedded tracer module that included realistic point discharge rates.

Comparison of feeding preferences of herbivorous fishes and the sea urchin in Little Cayman.

On Caribbean coral reefs, losses of two key groups of grazers, herbivorous fishes and , coincided with dramatic increases in macroalgae, which have contributed to decreases in the resilience of these coral reefs and continued low coral cover. In some locations, herbivorous reef fishes and populations have begun to recover, and reductions in macroalgal cover and abundance have followed. Harder to determine, and perhaps more important, are the combined grazing effects of herbivorous fishes and on the structure of macroalgal communities.

Transient naive reprogramming corrects hiPS cells functionally and epigenetically.

Cells undergo a major epigenome reconfiguration when reprogrammed to human induced pluripotent stem cells (hiPS cells). However, the epigenomes of hiPS cells and human embryonic stem (hES) cells differ significantly, which affects hiPS cell function. These differences include epigenetic memory and aberrations that emerge during reprogramming, for which the mechanisms remain unknown.

Concordance of microbial and visual health indicators of white-band disease in nursery reared Caribbean coral .

Background: Coral diseases are one of the leading causes of declines in coral populations. In the Caribbean, white band disease (WBD) has led to a substantial loss of corals. Although the etiologies of this disease have not been well described, characterizing the coral microbiome during the transition from a healthy to diseased state is critical for understanding disease progression.

Mixtures of genotypes increase disease resistance in a coral nursery.

Marine infectious diseases are a leading cause of population declines globally due, in large part, to challenges in diagnosis and limited treatment options. Mitigating disease spread is particularly important for species targeted for conservation. In some systems, strategic arrangement of organisms in space can constrain disease outbreaks, however, this approach has not been used in marine restoration.

The first assessment of the genetic diversity and structure of the endangered West Indian manatee in Cuba.

The coastal waters of Cuba are home to a small, endangered population of West Indian manatee, which would benefit from a comprehensive characterization of the population's genetic variation. We conducted the first genetic assessment of Cuban manatees to determine the extent of the population's genetic structure and characterize the neutral genetic diversity among regions within the archipelago. We genotyped 49 manatees at 18 microsatellite loci, a subset of 27 samples on 1703 single nucleotide polymorphisms (SNPs), and sequenced 59 manatees at the mitochondrial control region.

Spatial distribution of microbial communities among colonies and genotypes in nursery-reared .

Background: The architecturally important coral species and were historically common in the Caribbean, but have declined precipitously since the early 1980s. Substantial resources are currently being dedicated to coral gardening and the subsequent outplanting of asexually reproduced colonies of , activities that provide abundant biomass for both restoration efforts and for experimental studies to better understand the ecology of these critically endangered coral species.

Methods: We characterized the bacterial and archaeal community composition of corals in a Caribbean nursery to determine the heterogeneity of the microbiome within and among colonies.

Adaptation to Bleaching: Are Thermotolerant Symbiodiniaceae Strains More Successful Than Other Strains Under Elevated Temperatures in a Model Symbiotic Cnidarian?

The ability of some symbiotic cnidarians to resist and better withstand stress factors that cause bleaching is a trait that is receiving increased attention. The adaptive bleaching hypothesis postulates that cnidarians that can form a stable symbiosis with thermotolerant Symbiodiniaceae strains may cope better with increasing seawater temperatures. We used polyps of the scyphozoan, , as a model system to test symbiosis success under heat stress.

Plant-mediated community structure of spring-fed, coastal rivers.

Quantifying ecosystem-level processes that drive community structure and function is key to the development of effective environmental restoration and management programs. To assess the effects of large-scale aquatic vegetation loss on fish and invertebrate communities in Florida estuaries, we quantified and compared the food webs of two adjacent spring-fed rivers that flow into the Gulf of Mexico. We constructed a food web model using field-based estimates of community absolute biomass and trophic interactions of a highly productive vegetated river, and modeled long-term simulations of vascular plant decline coupled with seasonal production of filamentous macroalgae.

Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability.

Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead mollusc assemblages, 'DA') and contemporary surveys (live mollusc assemblages, 'LA') to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna.

COASTAL HABITAT CHANGE AND MARINE MEGAFAUNA BEHAVIOR: FLORIDA MANATEES ENCOUNTERING REDUCED FOOD PROVISIONS IN A PROMINENT WINTER REFUGE.

A decline in submerged aquatic vegetation (SAV) within Florida's spring-fed, thermal refuges raises questions about how these systems support winter foraging of Florida manatees (). We analyzed telemetry data for 12 manatees over seven years to assess their use of Kings Bay, a winter refuge with diminished SAV. After accounting for the effect of water temperature, we hypothesized that the number of trips out of Kings Bay would increase and the time wintering manatees spent in Kings Bay would decrease.

A spatial model to improve site selection for seagrass restoration in shallow boating environments.

Due to widespread and continuing seagrass loss, restoration attempts occur worldwide. This article presents a geospatial modeling technique that ranks the suitability of sites for restoration based on light availability and boating activity, two factors cited in global studies of seagrass loss and restoration failures. The model presented here was created for Estero Bay, Florida and is a predictive model of light availability and boating pressure to aid seagrass restoration efforts.

Light requirements of seagrasses determined from historical records of light attenuation along the Gulf coast of peninsular Florida.

Seagrasses around the world are threatened by human activities that degrade water quality and reduce light availability. In this study, light requirements were determined for four common and abundant seagrasses along the Gulf coast of peninsular Florida using a threshold detecting algorithm. Light requirements ranged from 8% to 10% of surface irradiance for Halophila engelmannii to 25-27% of surface irradiance for Halodule wrightii.

Total mercury concentrations in lionfish (Pterois volitans/miles) from the Florida Keys National Marine Sanctuary, USA.

Strategies to control invasive lionfish in the western Atlantic and Caribbean are likely to include harvest and consumption. Until this report, total mercury concentrations had been documented only for lionfish from Jamaica, and changes in concentrations with increasing fish size had not been evaluated. In the Florida Keys, total mercury concentrations in dorsal muscle tissue from 107 lionfish ranged from 0.

A positive trajectory for corals atLittle Cayman Island.

Coral reefs are damaged by natural disturbances and local and global anthropogenic stresses. As stresses intensify, so do debates about whether reefs will recover after significant damage. True headway in this debate requires documented temporal trajectories for coral assemblages subjected to various combinations of stresses; therefore, we report relevant changes in coral assemblages at Little Cayman Island.

Evaluating the potential efficacy of invasive lionfish (Pterois volitans) removals.

The lionfish, Pterois volitans (Linnaeus) and Pterois miles (Bennett), invasion of the Western Atlantic Ocean, Caribbean Sea and Gulf of Mexico has the potential to alter aquatic communities and represents a legitimate ecological concern. Several local removal programs have been initiated to control this invasion, but it is not known whether removal efforts can substantially reduce lionfish numbers to ameliorate these concerns. We used an age-structured population model to evaluate the potential efficacy of lionfish removal programs and identified critical data gaps for future studies.

Algal blooms and the nitrogen-enrichment hypothesis in Florida springs: evidence, alternatives, and adaptive management.

Contradictions between system-specific evidence and broader paradigms to explain ecosystem behavior present a challenge for natural resource management. In Florida (U.S.

High latitude changes in ice dynamics and their impact on polar marine ecosystems.

Polar regions have experienced significant warming in recent decades. Warming has been most pronounced across the Arctic Ocean Basin and along the Antarctic Peninsula, with significant decreases in the extent and seasonal duration of sea ice. Rapid retreat of glaciers and disintegration of ice sheets have also been documented.

Density-dependent habitat selection and performance by a large mobile reef fish.

Many exploited reef fish are vulnerable to overfishing because they concentrate over hard-bottom patchy habitats. How mobile reef fish use patchy habitat, and the potential consequences on demographic parameters, must be known for spatially explicit population dynamics modeling, for discriminating essential fish habitat (EFH), and for effectively planning conservation measures (e.g.