We investigate the endofullerene system Ne@C70 by constructing a three-dimensional Potential Energy Surface (PES) describing the translational motion of the Ne atom. This is constructed from electronic structure calculations from a plethora of methods, including MP2, SCS-MP2, SOS-MP2, RPA@PBE, and C(HF)-RPA, which were previously used for He@C60 in Panchagnula et al. [J.
View Article and Find Full Text PDFThe multireference coupled-cluster Monte Carlo (MR-CCMC) algorithm is a determinant-based quantum Monte Carlo (QMC) algorithm that is conceptually similar to Full Configuration Interaction QMC (FCIQMC). It has been shown to offer a balanced treatment of both static and dynamic correlation while retaining polynomial scaling, although application to large systems with significant strong correlation remained impractical. In this paper, we document recent algorithmic advances that enable rapid convergence and a more black-box approach to the multireference problem.
View Article and Find Full Text PDFTherapeutic antibodies (Abs) which act on a broader range of epitopes may provide more durable protection against the genetic drift of a target, typical of viruses or tumors. When these Abs exist concurrently on the targeted antigen, several mechanisms of action (MoAs) can be engaged, boosting therapeutic potency. This study selected combinations of four and five Abs with non- or partially overlapping epitopes to the SARS-CoV-2 spike glycoprotein, on or outside the crucial receptor binding domain (RBD), to offer resilience to emerging variants and trigger multiple MoAs.
View Article and Find Full Text PDFJ Chem Theory Comput
March 2024
The recent developments of quantum computing present novel potential pathways for quantum chemistry as the scaling of the computational power of quantum computers could be harnessed to naturally encode and solve electronic structure problems. Theoretically exact quantum algorithms for chemistry have been proposed (e.g.
View Article and Find Full Text PDFWe investigate the endofullerene system 3He@C60 with a four-dimensional potential energy surface (PES) to include the three He translational degrees of freedom and C60 cage radius. We compare second order Møller-Plesset perturbation theory (MP2), spin component scaled-MP2, scaled opposite spin-MP2, random phase approximation (RPA)@Perdew, Burke, and Ernzerhof (PBE), and corrected Hartree-Fock-RPA to calibrate and gain confidence in the choice of electronic structure method. Due to the high cost of these calculations, the PES is interpolated using Gaussian Process Regression (GPR), owing to its effectiveness with sparse training data.
View Article and Find Full Text PDFWe recently introduced an efficient methodology to perform density-corrected Hartree-Fock density functional theory [DC(HF)-DFT] calculations and an extension to it we called "corrected" HF DFT [C(HF)-DFT] [Graf and Thom, J. Chem. Theory Comput.
View Article and Find Full Text PDFJ Chem Phys
October 2023
Endohedral fullerenes, or endofullerenes, are chemical systems of fullerene cages encapsulating single atoms or small molecules. These species provide an interesting challenge of Potential Energy Surface determination as examples of non-covalently bonded, bound systems. While the majority of studies focus on C60 as the encapsulating cage, introducing some anisotropy by using a different fullerene, e.
View Article and Find Full Text PDFWe investigate the possibility of using a transcorrelated (TC) Hamiltonian to describe electron correlation. A method to obtain TC wavefunctions was developed based on the mathematical framework of the bi-variational principle. This involves the construction of an effective TC Hamiltonian matrix, which can be solved in a self-consistent manner.
View Article and Find Full Text PDFThe crucial step in density-corrected Hartree-Fock density functional theory (DC(HF)-DFT) is to decide whether the density produced by the density functional for a specific calculation is erroneous and, hence, should be replaced by, in this case, the HF density. We introduce an indicator, based on the difference in noninteracting kinetic energies between DFT and HF calculations, to determine when the HF density is the better option. Our kinetic energy indicator directly compares the self-consistent density of the analyzed functional with the HF density, is size-intensive, reliable, and most importantly highly efficient.
View Article and Find Full Text PDFBackground: Globally, mental health disorders rank as the greatest cause of disability. Low and middle-income countries (LMICs) hold a disproportionate share of the mental health burden, especially as it pertains to depression. Depression is highly prevalent among those with non-communicable diseases (NCDs), creating a barrier to successful treatment.
View Article and Find Full Text PDFPostsynthetic modification of metal-organic frameworks (MOFs) has proven to be a hugely powerful tool to tune physical properties and introduce functionality, by exploiting reactive sites on both the MOF linkers and their inorganic secondary building units (SBUs), and so has facilitated a wide range of applications. Studies into the reactivity of MOF SBUs have focussed solely on removal of neutral coordinating solvents, or direct exchange of linkers such as carboxylates, despite the prevalence of ancillary charge-balancing oxide and hydroxide ligands found in many SBUs. Herein, we show that the μ-OH ligands in the MIL-53 topology Sc MOF, GUF-1, are labile, and can be substituted for μ-OCH units through reaction with pore-bound methanol molecules in a very rare example of pressure-induced postsynthetic modification.
View Article and Find Full Text PDFIn two parallel pilot studies, we implemented a combination adherence intervention of patient-centered counselling and adherence supporter training, tailored to support HIV treatment (i.e., antiretroviral therapy) or prevention (i.
View Article and Find Full Text PDFThe development of multireference coupled cluster (MRCC) techniques has remained an open area of study in electronic structure theory for decades due to the inherent complexity of expressing a multiconfigurational wavefunction in the fundamentally single-reference coupled cluster framework. The recently developed multireference-coupled cluster Monte Carlo (mrCCMC) technique uses the formal simplicity of the Monte Carlo approach to Hilbert space quantum chemistry to avoid some of the complexities of conventional MRCC, but there is room for improvement in terms of accuracy and, particularly, computational cost. In this paper, we explore the potential of incorporating ideas from conventional MRCC-namely, the treatment of the strongly correlated space in a configuration interaction formalism-to the mrCCMC framework, leading to a series of methods with increasing relaxation of the reference space in the presence of external amplitudes.
View Article and Find Full Text PDFBackground: Couples HIV Counselling and Testing (CHCT) has been found to be potentially beneficial than individual HIV Counselling and Testing for prevention and treatment of HIV. However, there are few health care opportunities for men and women to access health services together, leading to underutilization of CHCT service. Integrating female Sexual and Reproductive Health (SRH) services into male-dominated service could be more effective than trying to integrate men's health services into female-dominated health services.
View Article and Find Full Text PDFJ Phys Chem C Nanomater Interfaces
August 2022
Electrochemical carbon dioxide capture recently emerged as a promising alternative approach to conventional energy-intensive carbon-capture methods. A common electrochemical capture approach is to employ redox-active molecules such as quinones. Upon electrochemical reduction, quinones become activated for the capture of CO through a chemical reaction.
View Article and Find Full Text PDFBreathing behaviour in metal-organic frameworks (MOFs), the distinctive transformation between a porous phase and a less (or non) porous phase, often controls the uptake of guest molecules, endowing flexible MOFs with highly selective gas adsorptive properties. In highly flexible topologies, breathing can be tuned by linker modification, which is typically achieved pre-synthetically using functionalised linkers. Herein, it was shown that MIL-88A(Sc) exhibits the characteristic flexibility of its topology, which can be tuned by 1) modifying synthetic conditions to yield a formate-buttressed analogue that is rigid and porous; and 2) postsynthetic bromination across the alkene functionality of the fumarate ligand, generating a product that is rigid but non-porous.
View Article and Find Full Text PDFIn quantum Monte Carlo (QMC) methods, energy estimators are calculated as (functions of) statistical averages of quantities sampled during a calculation. Associated statistical errors of these averages are often estimated. This error estimation is not straightforward and there are several choices of the error estimation methods.
View Article and Find Full Text PDFIntroduction: Cervical cancer is the leading cause of cancer death among women in Malawi. Low awareness of cervical cancer and negative perceptions of screening can prevent women from participating in preventative strategies. We sought to explore perceptions and motivations for screening among women who participated in a cervical cancer screen-and-treat pilot study in rural Malawi.
View Article and Find Full Text PDFJ Chem Theory Comput
February 2022
Current nonorthogonal configuration interaction (NOCI) methods often use a set of self-consistent field (SCF) states selected based on chemical intuition. However, it may be challenging to track these SCF states across a dissociation profile and the NOCI states recovered may be spin contaminated. In this Article, we propose a method of applying spin rotation on symmetry broken unrestricted Hartree-Fock (sb-UHF) states to generate a basis for NOCI.
View Article and Find Full Text PDFThis article summarizes technical advances contained in the fifth major release of the Q-Chem quantum chemistry program package, covering developments since 2015. A comprehensive library of exchange-correlation functionals, along with a suite of correlated many-body methods, continues to be a hallmark of the Q-Chem software. The many-body methods include novel variants of both coupled-cluster and configuration-interaction approaches along with methods based on the algebraic diagrammatic construction and variational reduced density-matrix methods.
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