Publications by authors named "Terry Logan"

The regulation of midline crossing of axons is of fundamental importance for the proper development of nervous system connectivity in bilaterian animals. A number of conserved axon guidance signaling pathways coordinate to attract or repel axons at the nervous system midline to ensure the proper regulation of midline crossing. The attractive Netrin-Frazzled/DCC (Net-Fra) signaling pathway is widely conserved among bilaterians, but it is not clear whether the mechanisms by which Net and Fra promote midline crossing are also conserved.

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The Synthetic Biology Knowledge System (SBKS) is an instance of the SynBioHub repository that includes text and data information that has been mined from papers published in ACS Synthetic Biology. This paper describes the SBKS curation framework that is being developed to construct the knowledge stored in this repository. The text mining pipeline performs automatic annotation of the articles using natural language processing techniques to identify salient content such as key terms, relationships between terms, and main topics.

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SBOLCanvas is a web-based application that can create and edit genetic constructs using the SBOL data and visual standards. SBOLCanvas allows a user to create a genetic design visually and structurally from start to finish. It also allows users to incorporate existing SBOL data from a SynBioHub repository.

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Article Synopsis
  • Engineers in synthetic biology use diagrams to represent nucleic acid sequences and their functional relationships, leading to the emergence of standardized practices.
  • The Synthetic Biology Open Language Visual (SBOL Visual) offers a coherent set of conventions for these diagrams, enhancing communication about genetic designs.
  • Version 2.3 of SBOL Visual introduces novel features, such as depicting complex interactions, overlapping glyphs for nucleic acids, and new glyphs for unspecified interactions and inert DNA spacers, improving upon the previous version 2.2.
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