Synthesis, mol-ecular and crystal structures of 4-amino-3,5-di-fluoro-benzo-nitrile, ethyl 4-amino-3,5-di-fluoro-benzoate, and diethyl 4,4'-(diazene-1,2-di-yl)bis-(3,5-di-fluoro-benzoate).

The crystal structures of two inter-mediates, 4-amino-3,5-di-fluoro-benzo-nitrile, CHFN (), and ethyl 4-amino-3,5-di-fluoro-benzoate, CHFNO (), along with a visible-light-responsive azo-benzene derivative, diethyl 4,4'-(diazene-1,2-di-yl)bis-(3,5-di-fluoro-benzoate), CHFNO (), obtained by four-step synthetic procedure, were studied using single-crystal X-ray diffraction. The mol-ecules of and demonstrate the quinoid character of phenyl rings accompanied by the distortion of bond angles related to the presence of fluorine substituents in the 3 and 5 () positions. In the crystals of and , the mol-ecules are connected by N-H⋯N, N-H⋯F and N-H⋯O hydrogen bonds, C-H⋯F short contacts, and π-stacking inter-actions.

A 1:1 flavone cocrystal with cyclic trimeric perfluoro--phenyl-enemercury.

The title compound, systematic name tris-(μ-perfluoro--phenyl-ene)(μ-3-phenyl-4-chromen-4-one)--trimercury, [Hg(CF)(CHO)], crystallizes in the monoclinic 2/ space group with one flavone (FLA) and one cyclic trimeric perfluoro--phenyl-enemercury (TPPM) mol-ecule per asymmetric unit. The FLA mol-ecule is located on one face of the TPPM acceptor and is linked in an asymmetric coordination of its carbonyl oxygen atom with two Hg centers of the TPPM macrocycle. The angular-shaped complexes pack in zigzag chains where they stack two alternating TPPM-TPPM and FLA-FLA stacking patterns.

Crystal structure and characterization of a new one-dimensional copper(II) coordination polymer containing a 4-amino-benzoic acid ligand.

A Cu coordination polymer, -poly[[[aqua-copper(II)]-bis-(μ-4-amino-benz-o-ato)-κ :;κ :] monohydrate], {[Cu(ABA)(HO)]·HO} (ABA = -amino-benzoate, CHNO ), was synthesized and characterized. It exhibits a one-dimensional chain structure extended into a three-dimensional supra-molecular assembly through hydrogen bonds and π-π inter-actions. While the twinned crystal shows a metrically ortho-rhom-bic lattice and an apparent space group , the true symmetry is monoclinic (space group 2/), with disordered Cu atoms and mixed roles of water mol-ecules (aqua ligand/crystallization water).

Antigenic Architecture of the H7N2 Influenza Virus Hemagglutinin Belonging to the North American Lineage.

The North American low pathogenic H7N2 avian influenza A viruses, which lack the 220-loop in the hemagglutinin (HA), possess dual receptor specificity for avian- and human-like receptors. The purpose of this work was to determine which amino acid substitutions in HA affect viral antigenic and phenotypic properties that may be important for virus evolution. By obtaining escape mutants under the immune pressure of treatment with monoclonal antibodies, antigenically important amino acids were determined to be at positions 125, 135, 157, 160, 198, 200, and 275 (H3 numbering).

Influenza A Virus M1 Protein Non-Specifically Deforms Charged Lipid Membranes and Specifically Interacts with the Raft Boundary.

Topological rearrangements of biological membranes, such as fusion and fission, often require a sophisticated interplay between different proteins and cellular membranes. However, in the case of fusion proteins of enveloped viruses, even one molecule can execute membrane restructurings. Growing evidence indicates that matrix proteins of enveloped viruses can solely trigger the membrane bending required for another crucial step in virogenesis, the budding of progeny virions.

Remarkable similarity of molecular packing in crystals of racemic and enantiopure 2-phenylpropionamide: Z' = 4 structures, molecular disorder, and the formation of a partial solid solution.

Substituted acetamides (many of which are chiral) are known to be pharmacologically active. 2-Phenylpropionamide (2PPA) is one of the simplest chiral α-substituted acetamides and thus is of interest as a model compound in the growth and design of pharmaceutical crystals. In this study, the crystal structures of racemic and enantiopure forms of 2PPA were determined for the first time using single crystal X-ray diffraction at 100 K.

A new pseudopolymorph of berberine chloride: crystal structure and Hirshfeld surface analysis.

A new pseudopolymorph of berberine, 9,10-dimeth-oxy-5,6-di-hydro-2-7λ-[1,3]dioxolo[4,5-]iso-quinolino-[3,2-]isoquinolin-7-ylium chloride methanol monosolvate, CHNO ·Cl·CHOH, was obtained during co-crystallization of berberine chloride with malonic acid from methanol. The berberine cations form dimers, which are further packed in stacks. The title structure was compared with other reported solvates of berberine chloride: its dihydrate, tetra-hydrate, and ethanol solvate hemihydrate.

Two metal-organic frameworks based on Sr and 1,2,4,5-tetra-kis-(4-carb-oxy-phen-yl)benzene linkers.

Two structurally different metal-organic frameworks based on Sr ions and 1,2,4,5-tetra-kis-(4-carb-oxy-phen-yl)benzene linkers have been synthesized solvothermally in different solvent systems and studied with single-crystal X-ray diffraction technique. These are poly[[μ-4,4',4'',4'''-(benzene-1,2,4,5-tetra-yl)tetra-benzoato](di-methyl-formamide)-distrontium(II)], [Sr(CHO)(CHNO)] , and poly[tetra-aqua-{μ-4,4'-[4,5-bis-(4-carb-oxy-phen-yl)benzene-1,2-di-yl]dibenzoato}tris-trontium(II)], [Sr(CHO)(HO)]. The differences are noted between the crystal structures and coordination modes of these two MOFs, which are responsible for their semiconductor properties, where structural control over the bandgap is desirable.

Studying the Effect of Amino Acid Substitutions in the M2 Ion Channel of the Influenza Virus on the Antiviral Activity of the Aminoadamantane Derivative and .

The aminoadamantane derivative of L-histidyl-1-adamantayl ethylamine hydrochloride (HCl*H-His-Rim) has showed a high inhibition level against influenza A virus strains . The aim of this work is to search and establish evidence of the direct effect of the drug on influenza A virus proton channel M2. The compound HCl*H-His-Rim was obtained by classical peptide synthesis methods.

Unsymmetrical Trifluoromethyl Methoxyphenyl β-Diketones: Effect of the Position of Methoxy Group and Coordination at Cu(II) on Biological Activity.

Copper(II) complexes with 1,1,1-trifluoro-4-(4-methoxyphenyl)butan-2,4-dione (H) were synthesized and characterized by elemental analysis, FT-IR spectroscopy, and single crystal X-ray diffraction. The biological properties of H and -[Cu()(DMSO)] () were examined against Gram-positive and Gram-negative bacteria and opportunistic unicellular fungi. The cytotoxicity was estimated towards the HeLa and Vero cell lines.

Synthesis, structures, and reactivity of isomers of [RuCp*(1,4-(MeN)CH)].

[RuCp*(1,3,5-RCH)] {Cp* = η-pentamethylcyclopentadienyl, R = Me, Et} have previously been found to be moderately air stable, yet highly reducing, with estimated D/0.5D (where D and D represent the dimer and the corresponding monomeric cation, respectively) redox potentials of -2.0 V FeCp.

Structural (at 100 K) and DFT studies of 2'-nitro-flavone.

The geometry of the title mol-ecule [systematic name: 2-(2-nitro-phen-yl)-4-chromen-4-one], CHNO, is determined by two dihedral angles formed by the mean plane of phenyl ring with the mean planes of chromone moiety and nitro group, being 50.73 (5) and 30.89 (7)°, respectively.

Mol-ecular and crystal structure, optical properties and DFT studies of 1,4-dimeth-oxy-2,5-bis-[2-(4-nitro-phen-yl)ethen-yl]benzene.

The title compound DBNB, CHNO, has been crystallized and studied by X-ray diffraction, spectroscopic and computational methods. In the title mol-ecule, which is based on a 1,4-distyryl-2,5-di-meth-oxy-benzene core with -nitro-substituted terminal benzene rings, the dihedral angle between mean planes of the central fragment and the terminal phenyl ring is 16.46 (6)°.

Mol-ecular and crystal structure, lattice energy and DFT calculations of two 2'-(nitro-benzo-yloxy)aceto-phenone isomers.

The two isomers 2'-(4-nitro-benzo-yloxy)aceto-phenone (systematic name: 2-acetyl-phenyl 4-nitro-benzoate) () and 2'-(2-nitro-benzo-yloxy)aceto-phenone (systematic name: 2-acetyl-phenyl 2-nitro-benzoate) (), both CHNO, with and positions of the nitro substituent have been crystallized and studied. It is evident that the variation in the position of the nitro group causes a significant difference in the mol-ecular conformations: the dihedral angle between the aromatic fragments in the mol-ecule of is 84.80 (4), while that in the mol-ecule of is 6.

Structural Diversity in 2,2'-[Naphthalene-1,8:4,5-bis(dicarboximide)-'-diyl]-bis(ethylammonium) Iodoplumbates.

Crystallization from solutions containing 2,2'-[naphthalene-1,8:4,5-bis(dicarboximide)-'-diyl]-bis(ethylammonium) diiodide ((NDIC2)I) and PbI has been investigated. Eight different materials are obtained, either by variation of crystallization conditions or by subsequent thermal or solvent-induced transformations. Crystal structures have been determined for five materials.

Crystal structures, syntheses, and spectroscopic and electrochemical measurements of two push-pull chromophores: 2-[4-(di-methyl-amino)-benzyl-idene]-1-indene-1,3(2)-dione and ()-2-{3-[4-(di-meth-ylamino)-phen-yl]allyl-idene}-1-indene-1,3(2)-dione.

The title pull-push chromophores, 2-[4-(di-methyl-amino)-benzyl-idene]-1-indene-1,3(2)-dione, CHNO (ID[1]) and ()-2-{3-[4-(di-methyl-amino)-phen-yl]allyl-idene}-1-indene-1,3(2)-dione, CHNO (ID[2]), have donor-π-bridge-acceptor structures. The mol-ecule with the short π-bridge, ID[1], is almost planar while for the mol-ecule with a longer bridge, ID[2], is less planar. The benzene ring is inclined to the mean plane of the 2,3-di-hydro-1-indene unit by 3.

Synthesis and structural study of organic two-photon-absorbing cycloalkanone chromophores.

The three organic two-photon-absorbing cycloalkanone chromophores 2,4-bis[4-(diethylamino)benzylidene]cyclobutanone, CHNO (I), 2,5-bis[4-(diethylamino)benzylidene]cyclopentanone, CHNO (II), and 2,6-bis[4-(diethylamino)benzylidene]cyclohexanone, CHNO (III), were obtained by a reaction between 4-(diethylamino)benzaldehyde and the corresponding cycloalkanone and were characterized by single-crystal X-ray diffraction studies, as well as density functional theory (DFT) quantum-chemical calculations. Molecules of this series have three main fragments, i.e.

Crystal structure of tetra-methyl-ammonium 1,1,7,7-tetra-cyano-hepta-2,4,6-trienide.

The title compound, CHN·CHN , contains one tetra-methyl-ammonium cation and one 1,1,7,7-tetra-cyano-hepta-2,4,6-trienide anion in the asymmetric unit. The anion is in an all- conjugated C=C bonds conformation. Two terminal C(CN) di-nitrile moieties are slightly twisted from the polymethine main chain to which they are attached [C(CN)/C dihedral angles = 6.

Synthesis and structure of push-pull merocyanines based on barbituric and thio-barbituric acid.

Two compounds, 1,3-diethyl-5-{(2,4)-6-[()-1,3,3-tri-methyl-indolin-2-yl-idene]hexa-2,4-dien-1-yl-idene}pyrimidine-2,4,6(1,3,5)-trione or TMI, CHNO, and 1,3-diethyl-2-sulfanyl-idene-5-[2-(1,3,3-tri-methyl-indolin-2-yl-idene)ethyl-idene]di-hydro-pyrimidine-4,6(1,5)-dione or DTB, CHNOS, have been crystallized and studied. These compounds contain the same indole derivative donor group and differ in their acceptor groups (in TMI it contains oxygen in the position, and in DTB sulfur) and the length of the π-bridge. In both materials, mol-ecules are packed in a herringbone manner with differences in the twist and fold angles.

Crystal structure and Hirshfeld surface analysis of new polymorph of racemic 2-phenyl-butyramide.

A new polymorph of the title compound, CHNO, was obtained by recrystallization of the commercial product from a water/ethanol mixture (1:1 /). Crystals of the previously reported racemic and homochiral forms of 2-phenyl-butyramide were grown from water-aceto-nitrile solution in 1:1 volume ratio [Khrustalev (2014 ▸). , 3360-3369].

Synthesis, crystal structure studies and solvatochromic behaviour of two 2-{5-[4-(dimethylamino)phenyl]penta-2,4-dien-1-ylidene}malononitrile derivatives.

The synthesis, crystal structure studies and solvatochromic behavior of 2-{(2E,4E)-5-[4-(dimethylamino)phenyl]penta-2,4-dien-1-ylidene}malononitrile, CHN (DCV[3]), and 2-{(2E,4E,6E)-7-[4-(dimethylamino)phenyl]hepta-2,4,6-trien-1-ylidene}malononitrile, CHN (DCV[4]), are reported and discussed in comparison with their homologs having a shorter length of the π-conjugated bridge. The compounds of this series have potential use as nonlinear materials with second-order effects due to their donor-acceptor structures. However, DCV[3] and DCV[4] crystallized in the centrosymmetric space group P2/c which excludes their application as nonlinear optical materials in the crystalline state.

Pleiotropic effects of hemagglutinin amino acid substitutions of influenza A(H1N1)pdm09 virus escape mutants.

In the present study we assessed pleiotropic characteristics of the antibody-selected mutations. We investigated pH optimum of fusion, temperatures of HA heat inactivation, in vivo and in vitro replication kinetics, and connectivity with panel of sera of survivors patients in different epidemic seasons of the previously obtained influenza H1 escape mutants. Our results showed that N133D (H3 numbering) mutation significantly lowered the pH of fusion optimum.

Z/E-Isomerism of 3-[4-(dimethylamino)phenyl]-2-(2,4,6-tribromophenyl)acrylonitrile: crystal structures and secondary intermolecular interactions.

The Z and E isomers of 3-[4-(dimethylamino)phenyl]-2-(2,4,6-tribromophenyl)acrylonitrile, CHBrN, (1), were obtained simultaneously by a Knoevenagel condensation between 4-(dimethylamino)benzaldehyde and 2-(2,4,6-tribromophenyl)acetonitrile, and were investigated by X-ray diffraction and density functional theory (DFT) quantum-chemical calculations. The (Z)-(1) isomer is monoclinic (space group P2/n, Z' = 1), whereas the (E)-(1) isomer is triclinic (space group P-1, Z' = 2). The two crystallographically-independent molecules of (E)-(1) adopt similar geometries.

Unusual Electronic Structure of the Donor-Acceptor Cocrystal Formed by Dithieno[3,2-a:2',3'-c]phenazine and 7,7,8,8-Tetracyanoquinodimethane.

Mixed cocrystals derived from electron-rich donor (D) and electron-deficient acceptor (A) molecules showcase electronic, optical, and magnetic properties of interest for a wide range of applications. We explore the structural and electronic properties of a cocrystal synthesized from dithieno[3,2-a:2',3'-c]phenazine (DTPhz) and 7,7,8,8-tetracyanoquinodimethane (TCNQ), which has a mixed-stack packing arrangement of the (π-electronic) face-to-face stacks in a 2:1 D:A stoichiometry. Density functional theory investigations reveal that the primary electronic characteristics of the cocrystal are not determined by electronic interactions along the face-to-face stacks, but rather they are characterized by stronger electronic interactions orthogonal to these stacks that follow the edge-to-edge donor-donor or acceptor-acceptor contacts.