Publications by authors named "Taras Petrenko"

For larger molecules, the computational demands of configuration selective vibrational configuration interaction theory (cs-VCI) are usually dominated by the configuration selection process, which commonly is based on second order vibrational Møller-Plesset perturbation (VMP2) theory. Here we present two techniques, which lead to substantial accelerations of such calculations while retaining the desired high accuracy of the final results. The first one introduces the concept of configuration classes, which allows for a highly efficient exploitation of the analogs of the Slater-Condon rules in vibrational structure calculations with large correlation spaces.

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Vibrational configuration interaction calculations (VCI) have been performed to study the impact of the nature of the underlying coordinate systems, i.e., canonical vs localized normal coordinates, on accurate vibrational structure calculations for non-Abelian molecules.

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The time-independent eigenstate-free Raman wavefunction approach for calculating anharmonic vibronic spectra has been extended for the calculation of Herzberg-Teller contributions on the basis of an n-mode expansion of the transition electric dipole moment surface. This allows for the efficient simulation of Franck-Condon dark vibronic spectra. In addition, vibrational angular momentum terms have been implemented into this formalism, as they are important for an accurate description of vibrational wavefunctions spanning double-well potentials.

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The X̃ A←X̃ A photoelectron spectrum of furan has been studied by a time-independent eigenstate-free Raman wave function approach based on multi-dimensional potential energy surfaces obtained from explicitly correlated distinguishable clusters calculations. Individual vibronic transitions with the most significant Franck-Condon factors were determined by our recently developed residual-based algorithm for the calculation of eigenpairs in conjunction with the formalism of contracted invariant Krylov subspaces. The account of anharmonic and temperature effects allowed us to explain most bands in an experimental high-resolution zero kinetic energy photoelectron spectrum.

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Due to a low-lying fragmentation channel, the X̃B ← X̃A photoelectron spectrum of difluoromethane is dominated by strong anharmonicity effects. We have used a time-independent eigenstate-free Raman wave function approach (RWF) to calculate the entire spectrum. Vibronic transitions with the most significant Franck-Condon factors were determined by employing our recently developed residual-based algorithm for the calculation of eigenpairs (RACE).

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Vibrational configuration interaction theory is a common method for calculating vibrational levels and associated IR and Raman spectra of small and medium-sized molecules. When combined with appropriate configuration selection procedures, the method allows the treatment of configuration spaces with up to 10 configurations. In general, this approach pursues the construction of the eigenstates with significant contributions of physically relevant configurations.

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The calculation of vibronic spectra and resonance Raman intensities can be performed on the basis of the Raman wavefunction (RWF) formalism. In general, the well-known sum-over-states (SOS) and time-dependent methods can be applied for calculating the RWF. We present an alternative route in which the RWF is determined pointwise in a spectral range on the basis of the inhomogeneous Schrödinger equation using an iterative subspace method, in which explicit state-by-state calculations of vibrational eigenstates are bypassed.

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High-valent iron(IV)-oxo species are key intermediates in the catalytic cycles of a range of O-activating iron enzymes. This work presents a detailed study of the electronic structures of mononuclear ([Fe(O)(L)(NCMe)], , L = tris(3,5-dimethyl-4-methoxylpyridyl-2-methyl)amine) and dinuclear ([(L)Fe(O)(μ-O)Fe(OH)(L)], ) iron(IV) complexes using absorption (ABS), magnetic circular dichroism (MCD) spectroscopy and wave-function-based quantum chemical calculations. For complex , the experimental MCD spectra at 2-10 K are dominated by a broad positive term band between 12000 and 18000 cm.

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In this work, an improved method for the efficient automatic simulation of optical band shapes and resonance Raman (rR) intensities within the "independent mode displaced harmonic oscillator" is described. Despite the relative simplicity of this model, it is able to account for the intensity distribution in absorption (ABS), fluorescence, and rR spectra corresponding to strongly dipole allowed electronic transitions with high accuracy. In order to include temperature-induced effects, we propose a simple extension of the time dependent wavepacket formalism developed by Heller which enables one to derive analytical expressions for the intensities of hot bands in ABS and rR spectra from the dependence of the wavepacket evolution on its initial coordinate.

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Hydrogenase proteins catalyze the reversible conversion of molecular hydrogen to protons and electrons. While many enzymatic states of the [NiFe] hydrogenase have been studied extensively, there are multiple catalytically relevant EPR-silent states that remain poorly characterized. Analysis of model compounds using new spectroscopic techniques can provide a framework for the study of these elusive states within the protein.

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Multiple spectroscopic and computational methods were used to characterize the ground-state electronic structure of the novel {CoNO}(9) species Tp*Co(NO) (Tp* = hydro-tris(3,5-Me(2)-pyrazolyl)borate). The metric parameters about the metal center and the pre-edge region of the Co K-edge X-ray absorption spectrum were reproduced by density functional theory (DFT), providing a qualitative description of the Co-NO bonding interaction as a Co(II) (S(Co) = 3/2) metal center, antiferromagnetically coupled to a triplet NO(-) anion (S(NO) = 1), an interpretation of the electronic structure that was validated by ab initio multireference methods (CASSCF/MRCI). Electron paramagnetic resonance (EPR) spectroscopy revealed significant g-anisotropy in the S = ½ ground state, but the linear-response DFT performed poorly at calculating the g-values.

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In this paper, we present the implementation of efficient approximations to time-dependent density functional theory (TDDFT) within the Tamm-Dancoff approximation (TDA) for hybrid density functionals. For the calculation of the TDDFT/TDA excitation energies and analytical gradients, we combine the resolution of identity (RI-J) algorithm for the computation of the Coulomb terms and the recently introduced "chain of spheres exchange" (COSX) algorithm for the calculation of the exchange terms. It is shown that for extended basis sets, the RIJCOSX approximation leads to speedups of up to 2 orders of magnitude compared to traditional methods, as demonstrated for hydrocarbon chains.

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A systematic study of 12 ferric and ferrous Kbeta X-ray emission spectra (XES) is presented. The factors contributing to the Kbeta main line and the valence to core region of the spectra are experimentally assessed and quantitatively evaluated. While the Kbeta main line spectra are dominated by spin state contributions, the valence to core region is shown to have greater sensitivity to changes in the chemical environment.

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The three square planar complexes [N(n-Bu)(4)](2)[Cr(II)L(2)] x 4 CH(3)CN (S = 2; 1), [N(n-Bu)(4)][Co(III)L(2)] (S = 1; 3), and [N(n-Bu)(4)](2)[Rh(II)L(2)] x 4 CH(3)CN (S = 1/2; 4) have been prepared and structurally characterized by X-ray crystallography (L(2-) represents the 3,6-bis(trimethylsilyl)benzene-1,2-dithiolate(2-)). Aerial oxidation of CH(2)Cl(2) solutions of 1 produced purple crystals of [N(n-Bu)(4)][Cr(V)OL(2)] x 2 CH(2)Cl(2) (S = 1/2; 2), the structure of which has also been determined by X-ray crystallography. The electro- and magnetochemistry of all species has been studied.

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Exchange coupling parameters and isotropic (55)Mn hyperfine couplings of fourteen mixed-valence Mn(III)-Mn(IV) dimers are determined using broken-symmetry density functional theory (DFT) and spin projection techniques. A systematic evaluation of density functional approaches shows that the TPSSh functional yields the best exchange coupling constants among all investigated methods, with deviations from experiment of the order of approximately 10-15%. For the prediction of (55)Mn hyperfine couplings the deficiencies of DFT in the description of core-level spin-polarization and the neglect of scalar relativistic effects lead to systematic deviations between theory and experiment that can be compensated through the use of a universal scaling factor.

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Twelve structural models for the S(2) state of the oxygen-evolving complex (OEC) of photosystem II are evaluated in terms of their magnetic properties. The set includes ten models based on the 'fused twist' core topology derived by polarized EXAFS spectra and two related models proposed in recent mechanistic investigations. Optimized geometries and spin population analyses suggest that Mn(iii), which is most often identified with the manganese ion at site D, is always associated with a penta-coordinate environment, unless a chloride is directly ligated to the metal.

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The reliable correlation of structural features and magnetic or spectroscopic properties of oligonuclear transition-metal complexes is a critical requirement both for research into innovative magnetic materials and for elucidating the structure and function of many metalloenzymes. We have developed a novel method that for the first time enables the extraction of hyperfine coupling constants (HFCs) from broken-symmetry density functional theory (BS-DFT) calculations on clusters. Using the geometry-optimized tetranuclear manganese complex [Mn(4)O(6)(bpy)(6)](4+/3+) as a model, we first examine in detail the calculation of exchange coupling constants J through the BS-DFT approach.

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Iron K-edge X-ray absorption pre-edge features have been calculated using a time-dependent density functional approach. The influence of functional, solvation, and relativistic effects on the calculated energies and intensities has been examined by correlation of the calculated parameters to experimental data on a series of 10 iron model complexes, which span a range of high-spin and low-spin ferrous and ferric complexes in O(h) to T(d) geometries. Both quadrupole and dipole contributions to the spectra have been calculated.

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A general method for the simulation of absorption (ABS) and fluorescence band shapes, resonance-Raman (rR) spectra, and excitation profiles based on the time-dependent theory of Heller is discussed. The following improvements to Heller's theory have been made: (a) derivation of new recurrence relations for the time-dependent wave packet overlap in the case of frequency changes between the ground and electronically excited states, (b) a new series expansion that gives insight into the nature of Savin's preresonance approximation, (c) incorporation of inhomogeneous broadening effects into the formalism at no additional computational cost, and (d) derivation of a new and simple short-time dynamics based equation for the Stokes shift that remains valid in the case of partially resolved vibrational structure. Our implementation of the time-dependent theory for the fitting of experimental spectra and the simulation of model spectra as well as the quantum mechanical calculation of the model parameters is discussed.

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The characterization of high-valent iron species is of interest due to their relevance to biological reaction mechanisms. Recently, we have synthesized and characterized an [Fe(V)-nitrido-cyclam-acetato]+ complex, which has been characterized by Mössbauer, magnetic susceptibility data, and XAS spectroscopies combined with DFT calculations (Aliaga-Alcade, N.; DeBeer George, S.

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A series of transition metal complexes involving non-innocent o-dithiolene and o-phenylenediamine ligands has been characterized in detail by various spectroscopic methods like magnetic circular dichroism (MCD), absorption (abs), resonance Raman (rR), electron paramagnetic resonance (EPR), and sulfur K-edge X-ray absorption spectroscopies. A computational model for the electronic structure of the complexes is then proposed based on the density functional theory (DFT) or ab-initio methods, which can successfully account for the observed trends in the experimental spectra (MCD, rR, and abs) of the complexes. Based on these studies, the innocent vs non-innocent nature of the ligands in a given transition metal complex is found to be dependent on the position of the central metal ion in the periodic table, its effective nuclear charge in interplay with relativistic effects.

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Transition metal complexes involving the benzene-1,2-dithiol (L(2-)) and Sellmann's 3,5-di-tert-butylbenzene-1,2-dithiol(L(Bu 2-)) ligands have been studied by UV-vis, infrared (IR), and resonance Raman (rR) spectroscopies. Raman spectra were obtained in resonance with the intervalence charge transfer (IVCT) bands in the near-infrared region and ligand-to-metal charge transfer (LMCT) bands in the near-UV region. Geometry optimization and frequency calculations using density functional theory (DFT) have been performed for [M(L)(2)](z) and [M(L(Bu))(2)](z) species (M = Ni, Pd, Pt, Co, Cu, Au, z = -1; M = Au, z = 0).

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