Publications by authors named "Tanguy A"

Article Synopsis
  • Ostrea edulis, the European flat oyster, has experienced significant population declines over the past 200 years, prompting restoration efforts focused on restocking and conservation.
  • This study utilized whole-genome sequencing to identify seven distinct genetic clusters of the oyster, revealing complex population structures and signs of genetic mixing in Scandinavian regions.
  • The findings emphasize the need to understand genetic diversity and local adaptation for effective conservation strategies to restore native European flat oyster populations.
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  • The bay scallop (Argopecten irradians) is important commercially, culturally, and ecologically, primarily found on the eastern U.S. coast but also farmed in China.
  • Researchers assembled a detailed chromosome-level reference genome for the bay scallop, with a total size of 845.9 Mb across 1,503 scaffolds and confirmed 16 chromosomes.
  • The genome includes a significant amount of repetitive elements (36.2%), is highly complete (96.2% according to BUSCO analysis), and contains 33,772 protein-coding genes, providing a resource for future evolutionary and conservation studies.
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  • - The hard clam, essential to the U.S. shellfish industry, faced declining populations due to overharvesting, but the shift to aquaculture has led to increased production and new challenges like disease outbreaks.
  • - Researchers developed a 66K SNP array after analyzing a large number of clam samples, which helps in genetic studies, breeding programs, and understanding disease resistance and adaptability to the environment.
  • - The array showed a high performance pass rate and reliability in detecting genetic diversity and relationships among clam populations, including markers for disease management, proving its effectiveness for further research and aquaculture practices.
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Zebra mussel (ZM), , commonly used as a sentinel species in freshwater biomonitoring, is now in competition for habitat with quagga mussel (QM), This raises the question of the quagga mussel's use in environmental survey. To better characterise QM response to stress compared with ZM, both species were exposed to cadmium (100 µg·L), a classic pollutant, for 7 days under controlled conditions. The gill proteomes were analysed using two-dimensional electrophoresis coupled with mass spectrometry.

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  • The study investigates the effects of reducing genomic sequencing on SARS-CoV-2 surveillance outcomes in Switzerland, analyzing over 143,000 sequences.
  • Results show that while some key outcomes like variant detection and cluster analysis could still be achieved with only 35% of the original sequencing effort, this reduction varies significantly by viral lineage.
  • The research highlights the need for genomic surveillance programs to balance cost and public health benefits, emphasizing that reduced sequencing may compromise accuracy in tracking emerging variants of concern.
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Nanophononic materials are characterized by a periodic nanostructuration, which may lead to coherent scattering of phonons, enabling interference and resulting in modified phonon dispersions. We have used the extreme ultraviolet transient grating technique to measure phonon frequencies and lifetimes in a low-roughness nanoporous phononic membrane of SiN at wavelengths between 50 and 100 nm, comparable to the nanostructure lengthscale. Surprisingly, phonon frequencies are only slightly modified upon nanostructuration, while phonon lifetime is strongly reduced.

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  • Ocean acidification (OA) poses a significant threat to marine life, particularly the eastern oyster (C. virginica), and this study investigates how these oysters can withstand OA through molecular mechanisms.
  • Researchers conducted experiments with oyster larvae, comparing the gene expression and genetic variation of individuals raised in normal vs. acidified conditions, revealing significant changes, especially in genes tied to shell formation and immune function.
  • The findings indicate that while short-term acclimation to OA is possible, it may come with sustainability concerns, highlighting the necessity of selecting resilient genetic variants for future oyster conservation and aquaculture efforts.
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The European flat oyster ( L.) is a bivalve naturally distributed across Europe, which was an integral part of human diets for centuries, until anthropogenic activities and disease outbreaks severely reduced wild populations. Despite a growing interest in genetic applications to support population management and aquaculture, a reference genome for this species is lacking to date.

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  • The European flat oyster's population has drastically declined due to two parasites, leading to stock collapse and loss of natural beds.
  • Research has focused on understanding immune responses to these parasites and developing genetic programs to enhance parasite resistance.
  • A newly completed chromosome-level genome assembly provides insights into the oyster's genetic makeup and is crucial for ongoing studies in breeding, aquaculture, and restoration of natural habitats.
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This volume of Evolutionary Applications sees the publication of two genomes for the European native flat oyster , a species of significant evolutionary, ecological and commercial value. Each is a highly contiguous chromosome-level assembly from individuals of different genetic backgrounds, which have been benchmarked against one another. This situation has resulted from the serendipitous discovery that two independent research groups were both deep into the process of building, annotating and investigating separately produced assemblies.

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  • The increase in CO2 levels is leading to ocean acidification, which threatens coastal marine ecosystems and important species like the northern quahog clam.
  • Research on the physiological effects of ocean acidification on this clam has shown negative impacts on growth and survival, but the molecular mechanisms behind their resilience remain unclear.
  • A study involving fertilized clam gametes revealed significant changes in gene expression and allele frequencies in clams reared under acidified conditions, focusing on genes related to shell formation, immune response, and metabolism that may help them cope with acidification.
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  • The hard clam Mercenaria mercenaria is an important marine species along the Atlantic coast, facing threats from diseases and environmental stress, making genome characterization essential for research and aquaculture.
  • A detailed genome assembly of 1.86 Gb revealed 19 chromosomes and 34,728 predicted protein-coding genes, showing significant similarities and variations compared to other clam species, particularly in immune-related proteins.
  • This study highlights the hard clam's diverse immune response, which may enhance its ability to deal with infections and environmental changes.
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Expected effects on marine biota of the ongoing elevation of water temperature and high latitudes is of major concern when considering the reliability of coastal ecosystem production. To compare the capacity of coastal organisms to cope with a temperature increase depending on their environmental history, responses of adult blue mussels (Mytilus spp.) taken from two sites differentially exposed to chemical pollution were investigated during an experimental exposure to a thermal stress.

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In this article, the effect on the vibrational and thermal properties of gradually interconnected nanoinclusions embedded in an amorphous silicon matrix is studied using molecular dynamics simulations. The nanoinclusion arrangement ranges from an aligned sphere array to an interconnected mesh of nanowires. Wave-packet simulations scanning different polarizations and frequencies reveal that the interconnection of the nanoinclusions at constant volume fraction induces a strong increase of the mean free path of high frequency phonons, but does not affect the energy diffusivity.

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Surface structuring provides a broad range of water-repellent materials known for their ability to reflect millimetre-sized raindrops. Dispelling water at the considerably reduced scale of fog or dew, however, constitutes a significant challenge, owing to the comparable size of droplets and structures. Nonetheless, a surface comprising nanocones was recently reported to exhibit strong anti-fogging behaviour, unlike pillars of the same size.

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Precipitates in an austenitic stainless steel fabricated via any Additive Manufacturing (AM), or 3D printing, technique have been widely reported to be only Mn-Si-rich oxides. However, via Transmission Electron Microscopy (TEM) studies on a 316L stainless steel, we show that non-oxide precipitates (intermetallics, sulfides, phosphides and carbides) can also form when the steel is fabricated via Laser Metal Deposition (LMD)-a directed energy deposition-type AM technique. An investigation into their origin is conducted with support from precipitation kinetics and finite element heat transfer simulations.

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Scanning Electron Microscopes (SEMs) often generate images with a shaded appearance which gives a natural 3D impression. Ergo, quite a few methods to reconstruct the 3D surface topography from these using shape-from-shading methods are available in the literature. Here, a novel approach is discussed which uses BackScatter Electron (BSE) images from multiple detectors to reconstruct the topography.

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Nowadays metamaterials are at the focus of an intense research as promising for thermal and acoustic engineering. However, the computational cost associated to the large system size required for correctly simulating them imposes the use of finite-elements simulations, developing continuum models, able to grasp the physics at play without entering in the atomistic details. Still, a correct description should be able to reproduce not only the extrinsic scattering sources on waves propagation, as introduced by the metamaterial microstructure, but also the intrinsic wave attenuation of the material itself.

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Article Synopsis
  • Hard clam populations in the northeastern U.S. have been declining due to a parasite called QPX, which affects both wild and aquacultured stocks.
  • This study identifies specific genetic variants (SNPs) linked to clam survivorship, analyzing samples from two distinct populations before and after QPX-related deaths using a draft genome assembly.
  • Approximately 200 genes showed significant variations, with 18 genes common to both populations, pointing towards pathways that may help in breeding clams resistant to QPX through marker-assisted selection.
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Biological rhythms are a fundamental property of life. The deep ocean covers 66% of our planet surface and is one of the largest biomes. The deep sea has long been considered as an arrhythmic environment because sunlight is totally absent below 1,000 m depth.

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  • Nanocomposites with crystalline nanoinclusions in amorphous matrices are being researched for energy harvesting, but how they affect thermal transport is still unclear.
  • This study uses molecular dynamics simulations to explore phonon dynamics and thermal conductivity in these materials, revealing that crystalline nanoinclusions alter low energy vibrations and affect thermal transport behavior.
  • The research shows that while the presence of nanoinclusions decreases the propagative component of thermal transport, the overall thermal conductivity remains largely unchanged due to the dominance of diffusive heat transfer, helping to clarify previously conflicting results in the field.
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Nanophononic materials have recently arisen as a promising way for controlling heat transport, mirroring the results in macroscopic phononic materials for sound transmission, filtering and attenuation applications. Here we present a Finite Element numerical simulation of the transient propagation of an acoustic Wave-Packet in a 2D nanophononic material, which allows to identify the effect of the nanostructuration on the acoustic attenuation length and thus on the transport regime for the vibrational energy. Assuming elastic behavior in the matrix and in the inclusions, we find that the rigidity contrast between them not only tunes the apparent attenuation length of the wave packet along its main trajectory, but gives rise to different behaviours, from weak to strong scattering, and waves pinning.

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In recent years, numerous studies conducted on teleost fish have highlighted the contribution of transcriptomic studies in elucidating the physiological mechanisms underlying the molecular events of oogenesis and follicular atresia, enabling the identification of potential genes and molecular networks that participate in both the reproductive cycle and the process of follicular atresia. Atresia can affect the reproductive potential of females by reducing the healthy eggs that a female can spawn in both aquaculture and wild populations. The substantial diversity of reproductive strategies exhibited by teleost fish has contributed to the difficulty in identifying common genes between species, but a set of core genes has emerged as potential markers for atresia in relation to apoptosis/autophagy, lipid metabolism, oxidative metabolism and other physiological processes similar to those identified in other vertebrates, even mammals.

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