Oligosaccharide and short-chain fatty acid: A double-edged sword in obese mice by regulating food intake and fat synthesis.

Dietary fiber has been used to prevent obesity by regulating the intestinal flora and promoting the production of short-chain fatty acids (SCFAs). However, it is insufficient to conclude the decisive role of microbiota and SCFAs by adding oligosaccharides to foods without caloric balance. In this study, the effects of oligosaccharides and their regulated microflora on the development of obesity in mice were studied by designing a high-fat diet with equal calories but different contents of oligosaccharides.

High enhancer activity is an epigenetic feature of HPV negative atypical head and neck squamous cell carcinoma.

Head and neck squamous cell carcinoma (HNSCC) is a heterogeneous disease with significant mortality and frequent recurrence. Prior efforts to transcriptionally classify HNSCC into groups of varying prognoses have identified four accepted molecular subtypes of the disease: Atypical (AT), Basal (BA), Classical (CL), and Mesenchymal (MS). Here, we investigate the active enhancer landscapes of these subtypes using representative HNSCC cell lines and identify samples belonging to the AT subtype as having increased enhancer activity compared to the other 3 HNSCC subtypes.

[Bioinformatics analysis of IκB gene family expression in human lung adenocarcinoma].

Objective To explore the clinical significance of inhibitor of NF-κB (IκB) family in lung adenocarcinoma (LUAD) through bioinformatics analysis. Methods The differentially expressed genes of IκB family in LUAD were screened by R language for survival analysis. The correlation between the expression of IκB family genes and clinicopathological characteristics was analyzed by R language, and the genes related to survival rate were selected for further study.

High spatial resolution fast Brillouin optical time-domain analysis enabled by frequency-agility digital optical frequency comb.

A significant spatial resolution enhancement scheme for digital optical frequency comb (DOFC)-based fast Brillouin optical time-domain analysis (BOTDA) is proposed and experimentally demonstrated by using frequency-agility probes, without sacrificing the frequency resolution. The proposed system ensures high spatial resolution by using short frame duration, meanwhile enabling high frequency resolution retrieval of the Brillouin gain spectrum using frequency interleaving of multiple frequency-agility DOFC probes. Additionally, quadratic phase coding is introduced to release the influence of the high peak to average power ratio of the probes.

CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.

Summary: The ongoing pandemic caused by SARS-CoV-2 emphasizes the importance of genomic surveillance to understand the evolution of the virus, to monitor the viral population, and plan epidemiological responses. Detailed analysis, easy visualization and intuitive filtering of the latest viral sequences are powerful for this purpose. We present CovRadar, a tool for genomic surveillance of the SARS-CoV-2 Spike protein.

Changes in Rhizosphere Soil Fungal Communities of Plantations at Different Development Stages on the Loess Plateau.

The soil fungal community is an important factor in the forest ecosystems, and a better understanding of its composition and dynamic changes will contribute to the maintenance, preservation, and sustainable development of the forest ecosystems. has been widely planted for local ecological restoration on the Loess Plateau in China in recent decades. However, these plantations have been degraded to different degrees with increasing stand age.

Biochemical Failure Is Not a Surrogate End Point for Overall Survival in Recurrent Prostate Cancer: Analysis of NRG Oncology/RTOG 9601.

Purpose: Metastasis-free survival (MFS), but not event-free survival, is a validated surrogate end point for overall survival (OS) in men treated for localized prostate cancer. It remains unknown if this holds true in biochemically recurrent disease after radical prostatectomy. Leveraging NRG/RTOG 9601, we aimed to determine the performance of intermediate clinical end points (ICEs) as surrogate end points for OS in recurrent prostate cancer.

Unconventional excitonic states with phonon sidebands in layered silicon diphosphide.

Complex correlated states emerging from many-body interactions between quasiparticles (electrons, excitons and phonons) are at the core of condensed matter physics and material science. In low-dimensional materials, quantum confinement affects the electronic, and subsequently, optical properties for these correlated states. Here, by combining photoluminescence, optical reflection measurements and ab initio theoretical calculations, we demonstrate an unconventional excitonic state and its bound phonon sideband in layered silicon diphosphide (SiP), where the bound electron-hole pair is composed of electrons confined within one-dimensional phosphorus-phosphorus chains and holes extended in two-dimensional SiP layers.

Integration in the C-band between quantum key distribution and the classical channel of 25 dBm launch power over multicore fiber media.

The quantum-classical coexistence can be implemented based on wavelength division multiplexing (WDM), but due to Raman noise, the wavelength spacing between quantum and classical signals and launch power from classical channels are restricted. Space division multiplexing (SDM) can now be availably achieved by multicore fiber (MCF) to reduce Raman noise, thereby loosening the restriction for coexistence in the same band and obtaining a high communication capacity. In this paper, we realize the quantum-classical coexistence over a 7-core MCF.

Grammar-Induced Wavelet Network for Human Parsing.

Most existing methods of human parsing still face a challenge: how to extract the accurate foreground from similar or cluttered scenes effectively. In this paper, we propose a Grammar-induced Wavelet Network (GWNet), to deal with the challenge. GWNet mainly consists of two modules, including a blended grammar-induced module and a wavelet prediction module.

A 5'-tiRNA fragment that inhibits proliferation and migration of laryngeal squamous cell carcinoma by targeting PIK3CD.

tRNA-derived small RNAs (tsRNAs) participate in several biological processes, including carcinogenesis. The correlations between tsRNAs and human cancers are attracting substantial attention. Nevertheless, the involvement of tsRNAs in laryngeal squamous cell carcinoma (LSCC) progression remains unclear.

Arbuscular Mycorrhizal Fungi Enhanced Drought Resistance of by Regulating the 14-3-3 Family Protein Genes.

Plants can improve their resistance to a variety of stresses by forming mutualistic relationships with arbuscular mycorrhizal fungi (AMF). The 14-3-3 protein is a major regulator of the plant stress response. However, the regulation mechanism of 14-3-3 family protein genes (14-3-3s) of mycorrhizal plants coping with stress during AMF symbiosis remains unclear.

Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies.

We applied our computational algorithm TRUST4 to assemble immune receptor (T-cell receptor/B-cell receptor) repertoires from approximately 12,000 RNA sequencing samples from The Cancer Genome Atlas and seven immunotherapy studies. From over 35 million assembled complete complementary-determining region 3 sequences, we observed that the expression of CCL5 and MZB1 is the most positively correlated genes with T-cell clonal expansion and B-cell clonal expansion, respectively. We analyzed amino acid evolution during B-cell receptor somatic hypermutation and identified tyrosine as the preferred residue.

Dietary soybeans worsen dextran sodium sulfate-induced colitis by disrupting intestinal ecology.

Food mediates susceptibility to inflammatory bowel diseases (IBDs) associated with the microbiome. Existing studies suggest that a high-sugar and high-fat diet promotes IBDs, but whether a plant-based diet is fully harmless to IBD improvement remains unknown. In this study, for the first time, we assessed the effect of soybean and its carbohydrates on dextran sodium sulfate (DSS)-induced colitis.

Immunogenomic intertumor heterogeneity across primary and metastatic sites in a patient with lung adenocarcinoma.

Background: Lung cancer is the leading cause of cancer death, partially owing to its extensive heterogeneity. The analysis of intertumor heterogeneity has been limited by an inability to concurrently obtain tissue from synchronous metastases unaltered by multiple prior lines of therapy.

Methods: In order to study the relationship between genomic, epigenomic and T cell repertoire heterogeneity in a rare autopsy case from a 32-year-old female never-smoker with left lung primary late-stage lung adenocarcinoma (LUAD), we did whole-exome sequencing (WES), DNA methylation and T cell receptor (TCR) sequencing to characterize the immunogenomic landscape of one primary and 19 synchronous metastatic tumors.

Decaprenyl Diphosphate Synthase Subunit 1 (PDSS1): A Potential Prognostic Biomarker and Immunotherapy-Target for Hepatocellular Carcinoma.

Purpose: PDSS1 (decaprenyl diphosphate synthase subunit 1) plays an important role in the progression of several types of tumor. However, the biological functions of PDSS1 remain unclear in patients with hepatocellular carcinoma (HCC). In this study, We attempted to determine the role of PDSS1 in predicting the survival and efficacy of immunotherapy for HCC patients.

Clinicopathological and Gene Mutation Analysis of 27 Cases with Extranodal Rosai-Dorfman Disease.

Objective: To investigate the clinicopathological features, and mutations of NRAS, KRAS, BRAF and MAP2K1 genes in extranodal Rosai-Dorfman disease (RDD).

Methods: The clinic opathological features of 27 patients with extranodal RDD were retrospectively analyzed, and the NRAS, KRAS, BRAF and MAP2K1 genes mutation were detected by Sanger sequencing.

Results: The male to female ratio was 1.

CdSe nanocrystal sensitized photon upconverting film.

Here, films using CdSe nanocrystal (NC) triplet photosensitizers in conjunction with diphenylanthracene (DPA) emitters were assembled to address several challenges to practical applications for solution-based photon upconversion. By using poly(9-vinylcarbazole) as a phosphorescent host in this film, volatile organic solvents are eliminated, the spontaneous crystallization of the emitter is significantly retarded, and ∼1.5% photon upconversion quantum yield (out of a maximum of 50%) is obtained.

Metamorphoses and explosively remote synchronization in dynamical networks.

We uncover a phenomenon in coupled nonlinear networks with a symmetry: as a bifurcation parameter changes through a critical value, synchronization among a subset of nodes can deteriorate abruptly, and, simultaneously, perfect synchronization emerges suddenly among a different subset of nodes that are not directly connected. This is a synchronization metamorphosis leading to an explosive transition to remote synchronization. The finding demonstrates that an explosive onset of synchrony and remote synchronization, two phenomena that have been studied separately, can arise in the same system due to symmetry, providing another proof that the interplay between nonlinear dynamics and symmetry can lead to a surprising phenomenon in physical systems.

C-band 200 Gbit/s/λ PAM-4 transmission over 2-km SSMF using look-up-table pre-distortion combined with nonlinear Tomlinson-Harashima pre-coding.

The performance of high baud-rate intensity modulation direct detection (IM-DD) transmissions is severely degraded by both the linear and nonlinear inter-symbol interference (ISI). Here, we propose and experimentally demonstrate a transmitter-side look-up-table pre-distortion combined with nonlinear Tomlinson-Harashima pre-coding (LUT_PD-NTHP) scheme with the capability of mitigating the linear and nonlinear ISI simultaneously, enabling a C-band 200 Gbit/s/λ PAM-4 transmission over 2-km standard single mode fiber (SSMF), under an end-to-end 10-dB bandwidth of about 20 GHz. The proposed LUT_PD-NTHP scheme is experimentally verified to be superior to the LUT pre-distortion combined with linear THP (LUT_PD-LTHP) scheme, in terms of both the receiver sensitivity and the LUT storage requirement, when only the feed-forward equalization (FFE) is used at the receiver-side.

Improved prediction of radiation pneumonitis by combining biological and radiobiological parameters using a data-driven Bayesian network analysis.

Grade 2 and higher radiation pneumonitis (RP2) is a potentially fatal toxicity that limits efficacy of radiation therapy (RT). We wished to identify a combined biomarker signature of circulating miRNAs and cytokines which, along with radiobiological and clinical parameters, may better predict a targetable RP2 pathway. In a prospective clinical trial of response-adapted RT for patients (n = 39) with locally advanced non-small cell lung cancer, we analyzed patients' plasma, collected pre- and during RT, for microRNAs (miRNAs) and cytokines using array and multiplex enzyme linked immunosorbent assay (ELISA), respectively.