Publications by authors named "Taketsugu T"

The synthesis of large, freestanding, single-atom-thick two-dimensional (2D) metallic materials remains challenging due to the isotropic nature of metallic bonding. Here, we present a bottom-up approach for fabricating macroscopically large, nearly freestanding 2D gold (Au) monolayers, consisting of nanostructured patches. By forming Au monolayers on an Ir(111) substrate and embedding boron (B) atoms at the Au/Ir interface, we achieve suspended monoatomic Au sheets with hexagonal structures and triangular nanoscale patterns.

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In recent years, automated reaction path search methods have established the concept of a reaction route network. The Reaction Space Projector (ReSPer) visualizes the potential energy hypersurface into a lower-dimensional subspace using principal coordinates. The main time-consuming process in ReSPer is calculating the structural distance matrix, making it impractical for complex organic reaction route networks.

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Transition state theory (TST) provides a framework to estimate the rate of chemical reactions. Despite its great success with many reaction systems, the underlying assumptions such as local equilibrium and nonrecrossing do not necessarily hold in all cases. Although dynamical systems theory can provide the mathematical foundation of reaction tubes existing in phase space that enables us to predict the fate of reactions free from the assumptions of TST, numerical demonstrations for large systems have been yet one of the challenges.

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Optical trapping is an effective tool for manipulating micrometer-sized particles, although its application to nanometer-sized particles remains difficult. The field of optical trapping has advanced significantly, incorporating more advanced techniques such as plasmonic structures. However, single-molecule trapping remains a challenge.

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Electron dynamics of the Na10 chain and the Na10-N2 complex locally excited by an atomistic optical near-field are investigated using real-time time-dependent density functional theory calculations on real-space grids. Ultrafast laser pulses were used to simulate the near-field excitation under on- and off-resonance conditions. Off-resonance excitation did not lead to the propagation of the excitation through the Na10 chain.

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Recent advent of diverse chemical entities necessitates a re-evaluation of chemical bond concepts, underscoring the importance of experimental evidence. Our prior study introduced a general methodology, termed Core Differential Fourier Synthesis (CDFS), for mapping the distribution of valence electron density (VED) in crystalline substances within real space. In this study, we directly compare the VED distributions obtained through CDFS with those derived from high-accuracy theoretical calculation using long-range corrected density functional theory, which quantitatively reproduces accurate orbital energies.

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Triplet generations in heavy atom-free organic molecules are primarily revealed to proceed through singlet fissions (SFs) by investigating the contributions of SFs and intersystem crossings to the generation rates. The spin-flip long-range corrected time-dependent density functional theory calculations on 11 organic molecules known for triplet generation under photoirradiation are performed. The correlation between the descriptors for SF and the experimental singlet-to-triplet conversion rates strongly supports the predominance of SF progressions in all these molecules, corroborated by experimental observations of their triplet-triplet annihilations.

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Large dissymmetry factor of the circularly polarized luminescence (g) was observed in ligand and coordination tuned chiral tetrakis europium (Eu(III)) complexes with ammonium cations. The g value was estimated to be -1.54, which is the largest among chiral luminescent molecules.

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Metal-organic cages (MOCs) with luminophores have significant advantages for the facile detection of specific molecules based on turn-on or turn-off luminescence changes induced by host-guest complexation. One important challenge is the development of turn-on-type near-infrared (NIR)-luminescent MOCs. In this study, we synthesized a novel MOC consisting of two porphyrin dyes linked by four Yb(III) complexes, which exhibit bimodal red and NIR fluorescence signals upon photoexcitation of the porphyrin π system.

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In this study, we have advanced the field of light-driven molecular rotary motors (LDMRMs) by achieving two pivotal goals: lowering the thermal helix inversion (THI) barrier and extending the absorption wavelength into the visible spectrum. This study involves the structural reengineering of a second-generation visible LDMRM, resulting in the synthesis of a novel class, specifically, 2-((2)-5-methoxy-2-methyl-2,3-dihydro-1-cyclopenta[]naphthalen-1-yl)-3-oxo-2,3-dihydro-1-dibenzo[,]indole-6,9-dicarbonitrile. This redesigned motor stands out with its two photoisomerization stages and two thermal helix inversions, featuring exceptionally low THI barriers (4.

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Complex networks are pervasive in various fields such as chemistry, biology, and sociology. In chemistry, first-order reaction networks are represented by a set of first-order differential equations, which can be constructed from the underlying energy landscape. However, as the number of nodes increases, it becomes more challenging to understand complex kinetics across different timescales.

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Molecular passivation is a prominent approach for improving the performance and operation stability of halide perovskite solar cells (HPSCs). Herein, we reveal discernible effects of diammonium molecules with either an aryl or alkyl core onto Methylammonium-free perovskites. Piperazine dihydriodide (PZDI), characterized by an alkyl core-electron cloud-rich-NH terminal, proves effective in mitigating surface and bulk defects and modifying surface chemistry or interfacial energy band, ultimately leading to improved carrier extraction.

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Caged compounds are frequently used in life science research. However, the light used to activate them is commonly absorbed and scattered by biological materials, limiting their use to basic research in cells or small animals. In contrast, hard X-rays exhibit high bio-permeability due to the difficulty of interacting with biological molecules.

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The feasibility of singlet fission (SF) in organic photosensitizers is investigated through spin-flip long-range corrected time-dependent density functional theory. This study focuses on four major organic photosensitizer molecules: benzophenone, boron-dipyrromethene, methylene blue, and rose bengal. Calculations demonstrate that all these molecules possess moderate [Formula: see text]-stacking energies and closely-lying singlet (S) and quintet (triplet-triplet, TT) excitations, satisfying the essential conditions for SF: (1) Near-degenerate low-lying S and (TT) excitations with a significant S-T energy gap, and (2) Moderate [Formula: see text]-stacking energy of chromophores, slightly higher than solvation energy, enabling dissociation for triplet-state chromophore generation.

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Trans-cis photoisomerization is generally described by a model in which the reaction proceeds via a common intermediate having a perpendicular conformation around the rotating bond, irrespective of from which isomer the reaction starts. Nevertheless, such an intermediate has yet to be identified unambiguously, and it is often called the 'phantom' state. Here we present the structural identification of the common, perpendicular intermediate of stilbene photoisomerization using ultrafast Raman spectroscopy.

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The roles of singlet fission in the triplet generation of silicon phthalocyanine (SiPc), a compound analogous to the IRDye700DX photosensitizer used in near-infrared photoimmunotherapy, are investigated by considering the energetical relation between the excitations of this compound. These excitations are obtained through spin-flip long-range corrected time-dependent density functional theory calculations. To initiate singlet fission, chromophores must meet two conditions: (1) near-degenerate low-lying singlet and quintet (triplet-triplet) excitations with a considerable energy gap of the lowest singlet and triplet excited states and (2) moderate π-stacking energy of chromophores, which is higher than but not far from the solvation energy, to facilitate the dissociation and generation of triplet-state chromophores.

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We report that a newly developed type of triaryltriazine rotor, which bears bulky silyl moieties on the position of its peripheral phenylene groups, forms a columnar stacked clutch structure in the crystalline phase. The phenylene units of the crystalline rotors display two different and interconvertible correlated molecular motions. It is possible to switch between these intermolecular geared rotational motions via a thermally induced crystal-to-crystal phase transition.

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A metal-metal bond between coordination complexes has the nature of a covalent bond in hydrocarbons. While bimetallic and trimetallic compounds usually have three-dimensional structures in solution, the high directionality and robustness of the bond can be applied for on-surface syntheses. Here, we present a systematic formation of complex organometallic oligomers on Cu(111) through sequential ring opening of 11,11,12,12-tetraphenyl-1,4,5,8-tetraazaanthraquinodimethane and bonding of phenanthroline derivatives by multiple Cu atoms.

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Recently, surface-hopping ab initio molecular dynamics (SH-AIMD) simulations have come to be used to discuss the mechanisms and dynamics of excited-state chemical reactions, including internal conversion and intersystem crossing. In dynamics simulations involving intersystem crossing, there are two potential energy surfaces (PESs) governing the motion of nuclei: PES in a spin-pure state and PES in a spin-mixed state. The former gives wrong results for molecular systems with large spin-orbit coupling (SOC), while the latter requires a potential gradient that includes a change in SOC at each point, making the computational cost very high.

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Total and orbital electron densities of molecules are explored for the effect of the long-range correction (LC) for density functional theory (DFT) exchange functionals by comparing to the effect of the ab initio coupled cluster singles and doubles (CCSD) method. Calculating the LC effect on the total electron densities shows that the LC stabilizes the electrons around the long-range interaction regions of kinetic energy density, which are assumed to be electrons other than free electrons and self-interacting electrons, while the CCSD method stabilizes the electrons in the long-range interaction regions in the vertical molecular planes. As a more precise test, the LC effect on orbital densities are compared to the CCSD effect on Dyson orbital densities.

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This study develops an algorithm to reproduce reaction route maps (RRMs) in the shape space from the outputs of potential search algorithms. To demonstrate the algorithm, global reaction route mapping is utilized as a potential search algorithm, but the proposed algorithm should work with other potential search algorithms in principle. The proposed algorithm does not require any encoding of the molecular configurations and is thus applicable to complicated realistic molecules for which efficient encoding is not readily available.

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The catalytic combustion of methane at a low temperature is becoming increasingly key to controlling unburned CH emissions from natural gas vehicles and power plants, although the low activity of benchmark platinum-group-metal catalysts hinders its broad application. Based on automated reaction route mapping, we explore main-group elements catalysts containing Si and Al for low-temperature CH combustion with ozone. Computational screening of the active site predicts that strong Brønsted acid sites are promising for methane combustion.

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Article Synopsis
  • A reaction route map (RRM) is created using the GRRM program and consists of elementary reaction pathways with equilibrium geometries and transition states connected by an intrinsic reaction coordinate.
  • This study introduces a method to extract topological descriptors from a weighted graph representation of the RRM using persistent homology (PH), building on previous work by Mirth et al. that applied PH to energy surfaces.
  • The proposed method effectively captures information similar to Mirth et al.'s method for 0-th and 1-st PHs, showing that the descriptors can accurately characterize chemical reactions and physicochemical properties of molecular systems.
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As a dimetal-binding rigid scaffold, 2-(pyridin-2-yl)imidazo[1,5-b]pyridazine-7-ylidene was introduced. The scaffold was first converted into a meridional Au,N,N-tridentate ligand through binding of a Au(I)Cl moiety at the carbene center. The Au(I) center and the N,N-chelating moiety were expected to function as metallophilic and 4e-σ-donative interaction sites, respectively, in the binding of the second metal center.

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Herein, we investigated the thermodynamic stability and opto-electronic properties of a newly BN-doped azulene. The gas-phase formation enthalpies of 11 BN-doped azulene were calculated by the atomization energy method using three computational models (CBS-APNO, CBS-QB3, and G3MP2). The results suggest that AZ-1N9B exhibits the highest stability among the studied isomers.

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