Publications by authors named "Taehee Ko"

We train an equivariant machine learning (ML) model to predict energies and forces for hydrogen combustion under conditions of finite temperature and pressure. This challenging case for reactive chemistry illustrates that ML potential energy surfaces are difficult to make complete, due to overreliance on chemical intuition of what data are important for training. Instead, a 'negative design' data acquisition strategy using metadynamics as part of an active learning workflow helps to create a ML model that avoids unforeseen high-energy or unphysical energy configurations.

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We use local diffusion maps to assess the quality of two types of collective variables (CVs) for a recently published hydrogen combustion benchmark dataset that contains ab initio molecular dynamics (MD) trajectories and normal modes along minimum energy paths. This approach was recently advocated in for assessing CVs and analyzing reactions modeled by classical MD simulations. We report the effectiveness of this approach to molecular systems modeled by quantum ab initio MD.

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Article Synopsis
  • * The balance between GCs and the glucocorticoid receptor II (GR) is essential for their functionality, while both the nucleus and mitochondria must work together to ensure efficient cellular responses and mitochondrial health.
  • * Research is exploring how GCs can directly and indirectly regulate mitochondrial gene expression, revealing that GRs in mitochondria and glucocorticoid response elements (GREs) in mitochondrial DNA play significant roles in this regulation.
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  • Researchers studied the effects of autophagy, specifically the deletion of Atg7 in skeletal muscle, and found that this led to mice having less fat mass and resistance to diet-induced obesity and insulin resistance.
  • The results were linked to increased fatty acid oxidation and changes in white adipose tissue due to elevated levels of a hormone called Fgf21.
  • Autophagy deficiency caused mitochondrial dysfunction, which increased Fgf21 expression via a stress response regulator, suggesting a protective mechanism against obesity and insulin resistance.
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