Publications by authors named "Szymon Kubiszewski-Jakubiak"

Article Synopsis
  • * The replication cycle of coronaviruses heavily depends on the interaction between viral proteins and different membranes, particularly involving transmembrane domains (TMDs) and pre-transmembrane domains (pre-TMDs).
  • * This study analyzes the physical and chemical characteristics of TMDs and pre-TMDs in viral proteins, highlighting their unique features in coronaviruses and their potential roles in adapting to host membranes and maintaining protein retention during replication.
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  • Hemagglutinin (HA) is a key viral protein of the influenza A virus, essential for host cell recognition and virus entry, and serves as a major target for the immune system.
  • HA consists of homotrimers with a variable globular head and a conserved stalk, and its structure includes various domains: a hydrophilic ectodomain, a pre-transmembrane domain, a hydrophobic transmembrane domain, and a cytoplasmic tail.
  • Recent analysis of HA sequences from different subtypes revealed significant variations in physiological properties that could influence how HA interacts with lipids, its trimer formation, and how the immune system recognizes it.
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The capacity to assimilate carbon and nitrogen, to transport the resultant sugars and amino acids to sink tissues, and to convert the incoming sugars and amino acids into storage compounds in the sink tissues, are key determinants of crop yield. Given that all of these processes have the potential to co-limit growth, multiple genetic interventions in source and sink tissues, plus transport processes may be necessary to reach the full yield potential of a crop. We used biolistic combinatorial co-transformation (up to 20 transgenes) for increasing C and N flows with the purpose of increasing tomato fruit yield.

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  • Mitochondria in plant cells are essential for energy production, growth, and responses to stress, with their function regulated by proteins in the double membrane.
  • The novel β-barrel protein, OM47, is specific to green plants and can complement a VDAC mutant in yeast, but its mutation in Arabidopsis thaliana does not impact the import of other proteins into mitochondria.
  • Analysis of om47 mutants showed delayed chlorophyll breakdown and higher starch levels, indicating OM47’s role in leaf senescence and its potential function in recycling chloroplast breakdown products.
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  • - Plants lack sufficient tRNAs to translate genes encoded by their mitochondria, necessitating the import of tRNAs from the cytoplasm, and this study focuses on two proteins, Tric1 and Tric2, in Arabidopsis thaliana essential for this process.
  • - Inactivating Tric1 and Tric2 using T-DNA insertion leads to stunted, yellowing growth and a reduced capacity for tRNA import into mitochondria, highlighting their vital role.
  • - The study reveals that a specific part of Tric1 and Tric2 is crucial for binding and importing tRNAs, while also showing that their inactivation affects mitochondrial gene expression and protein synthesis by altering the nuclear transcriptome.
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The eukaryotic cell is defined by compartments that allow specialization of function. This compartmental structure generates a new concept in cell biology compared with the simpler prokaryotic cell structure, namely the specific targeting of proteins to intracellular compartments. Protein targeting is achieved by the action of specialized signals on proteins destined for organelles that are recognized by cognate receptors.

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During evolution, most of the ancestral genes from the endosymbiotic α-proteobacteria at the origin of mitochondria have been either lost or transferred to the nuclear genome. To allow the comeback of proteins and RNAs [in particular transfer RNA (tRNAs)] into the organelle, macromolecule import systems were universally established. While protein import processes have been studied into details, much less is known about tRNA mitochondrial import.

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In the 2 billion years since the endosymbiotic event that gave rise to mitochondria, variations in mitochondrial protein import have evolved across different species. With the genomes of an increasing number of plant species sequenced, it is possible to gain novel insights into mitochondrial protein import pathways. We have generated the Mitochondrial Protein Import Components (MPIC) Database (DB; http://www.

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Diverse signaling pathways are activated by perturbation of mitochondrial function under different growth conditions.Mitochondria have emerged as an important organelle for sensing and coping with stress in addition to being the sites of important metabolic pathways. Here, responses to moderate light and drought stress were examined in different Arabidopsis (Arabidopsis thaliana) mutant plants lacking a functional alternative oxidase (alternative oxidase1a [aox1a]), those with reduced cytochrome electron transport chain capacity (T3/T7 bacteriophage-type RNA polymerase, mitochondrial, and plastidial [rpoTmp]), and double mutants impaired in both pathways (aox1a:rpoTmp).

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The majority of more than 1000 proteins present in mitochondria are imported from nuclear-encoded, cytosolically synthesized precursor proteins. This impressive feat of transport and sorting is achieved by the combined action of targeting signals on mitochondrial proteins and the mitochondrial protein import apparatus. The mitochondrial protein import apparatus is composed of a number of multi-subunit protein complexes that recognize, translocate, and assemble mitochondrial proteins into functional complexes.

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In Arabidopsis (Arabidopsis thaliana), small gene families encode multiple isoforms for many of the components of the mitochondrial protein import apparatus. There are three isoforms of the TRANSLOCASE OF THE INNER MEMBRANE17 (Tim17). Transcriptome analysis indicates that AtTim17-1 is only detectable in dry seed.

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The mitochondrial import machinery and the respiratory chain complexes of the inner membrane are highly interdependent for the efficient import and assembly of nuclear encoded respiratory chain components and for the generation of a proton motive force essential for protein translocation into or across the inner membrane. In plant and non-plant systems functional, physical, and evolutionary associations have been observed between proteins of the respiratory chain and protein import apparatus. Here we identify two novel Tim21-like proteins encoded by At2g40800 and At3g56430 that are imported into the mitochondrial inner membrane.

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Article Synopsis
  • The study focused on identifying novel proteins in the outer mitochondrial membrane of Arabidopsis (Arabidopsis thaliana) using quantitative mass spectrometry combined with biochemical and cell biology techniques, overcoming challenges posed by contamination from the inner membrane.
  • A total of 42 proteins were identified, with 27 being novel, significantly increasing the known outer membrane proteins in plant mitochondria and hinting at unique functions.
  • Among the novel proteins were those influencing mitochondrial morphology, indicating a bacterial type lipid presence, and others related to embryo development, highlighting potential plant-specific adaptations in mitochondrial functions.
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