Publications by authors named "Sumire Kobayashi"

Article Synopsis
  • * A study used CRISPR/Cas9 to create knockout mouse models to investigate the importance of Pate family genes and related protein-coding genes in male fertility.
  • * Results revealed that male mice lacking certain combinations of these genes showed reduced fertility due to lower levels of a key protein, ADAM3, and issues with sperm migration, indicating the collaborative function of these genes in promoting fertility.
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We describe a case of a mucosal prolapse syndrome (MPS)-like inflammatory polyp protruding from the appendiceal orifice, mimicking an appendiceal neoplasm. A 48-year-old man presented with lower abdominal pain and elevated white blood cell count and C-reactive protein level. Computed tomography showed a swollen appendix with multiple small saccular lesions and periappendiceal fat stranding and small saccular lesions in the ascending colon and cecum.

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Article Synopsis
  • Sperm-oocyte membrane fusion is crucial for fertilization, involving specific proteins such as IZUMO1 and FIMP on the sperm side and CD9 and JUNO on the oocyte side.
  • New research identifies genes in mice that encode proteins necessary for sperm-oocyte fusion, specifically SOF1, TMEM95, and SPACA6, with mutations leading to male sterility despite having IZUMO1.
  • These proteins may work together with IZUMO1 and possibly other unidentified fusogenic proteins to facilitate the fusion process, but do not enhance membrane adhesion or fusion capabilities in isolated conditions.
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Article Synopsis
  • CRISPR/Cas9 technology was used to create knockout mice for genes related to male reproduction to identify proteins essential for fertility.
  • The study focused on deleting genes from specific clusters, including cystatin and PATE proteins, as well as other gene families that are important for sperm function.
  • Findings revealed that certain gene disruptions led to male sterility or fertility issues, highlighting the critical roles of specific proteins in sperm migration and fertilization processes.
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Seminal vesicle secretions (SVSs), together with spermatozoa, are ejaculated into the female reproductive tract. SVS7, also known as PATE4, is one of the major SVS proteins found in the seminal vesicle, copulatory plug, and uterine fluid after copulation. Here, we generated Pate4 knockout (-/-) mice and examined the detailed function of PATE4 on male fecundity.

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Planarians have established a unique body pattern along the anterior-posterior (AP) axis, which consists of at least four distinct body regions arranged in an anterior to posterior sequence: head, prepharyngeal, pharyngeal (containing a pharynx), and tail regions, and possess high regenerative ability. How they reconstruct the regional continuity in a head-to-tail sequence after amputation still remains unknown. We use as a model planarian Dugesia japonica head regeneration from tail fragments, which involves dynamic rearrangement of the body regionality of preexisting tail tissues along the AP axis, and show here that RNA interference of the gene D.

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Gyrokinetic simulations of small-scale turbulent transport in a closed magnetic field-line plasma geometry are presented. The simulations are potentially applicable to dipolar systems such as the levitated dipole experiment (LDX) [J. Kesner, Plasma Phys.

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Gyrokinetic flux-tube simulations of turbulent transport due to small-scale entropy modes are presented in a ring-dipole magnetic geometry relevant to the Columbia-MIT levitated dipole experiment (LDX) [J. Kesner, Plasma Phys. J.

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microRNAs in the miR-106b family are overexpressed in multiple tumor types and are correlated with the expression of genes that regulate the cell cycle. Consistent with these observations, miR-106b family gain of function promotes cell cycle progression, whereas loss of function reverses this phenotype. Microarray profiling uncovers multiple targets of the family, including the cyclin-dependent kinase inhibitor p21/CDKN1A.

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We identified gene expression signatures predicting responsiveness to a Kinesin-5 (KIF11) inhibitor (Kinesin-5i) in cultured colon tumor cell lines. Genes predicting resistance to Kinesin-5i were enriched for those from chromosome 20q, a region of frequent amplification in a number of tumor types. siRNAs targeting genes in this chromosomal region identified AURKA, TPX2 and MYBL2 as genes whose disruption enhances response to Kinesin-5i.

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Spatiotemporal chaos on a regular ring network of excitable Gray-Scott dynamical elements collapses to a stable asymptotic state. We find that the addition of dynamical noise clearly influences the spatiotemporal pattern and the transient lifetime of spatiotemporal chaos. Spatially uniform noise significantly decreases the average lifetime of spatiotemporal chaos due to an enlargement of regions of local collapse.

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CTLA-4 and PD-1 are receptors that negatively regulate T-cell activation. Ligation of both CTLA-4 and PD-1 blocked CD3/CD28-mediated upregulation of glucose metabolism and Akt activity, but each accomplished this regulation using separate mechanisms. CTLA-4-mediated inhibition of Akt phosphorylation is sensitive to okadaic acid, providing direct evidence that PP2A plays a prominent role in mediating CTLA-4 suppression of T-cell activation.

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High-capacity methods for assessing gene function have become increasingly important because of the increasing number of newly identified genes emerging from large-scale genome sequencing and cDNA cloning efforts. We investigated the use of DNA microarrays to identify uncharacterized genes specifically involved in human T cell activation. Activation of human peripheral blood T lymphocytes induced significant changes in hundreds of transcripts, but most of these were not unique to T cell activation.

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DNA microarray technology is used to determine gene expression profiles of various cell types, especially abnormal cells, such as cancer. By contrast, relatively little attention has been given to expression profiling of normal tissues. Here we describe studies of gene expression in peripheral blood leukocytes (PBL) from normal individuals sampled multiple times over periods ranging from several weeks up to 6 months.

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RNA interference is thought to require near-identity between the small interfering RNA (siRNA) and its cognate mRNA. Here, we used gene expression profiling to characterize the specificity of gene silencing by siRNAs in cultured human cells. Transcript profiles revealed siRNA-specific rather than target-specific signatures, including direct silencing of nontargeted genes containing as few as eleven contiguous nucleotides of identity to the siRNA.

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Signals generated by T cell receptor (TCR) and CD28 engagement are required for optimal T cell activation, but how these signals integrate within the cell is still largely unknown. We have used near genome-scale expression profiling to monitor T cell signal transduction pathways triggered via TCR and/or costimulatory receptors. Ligation of CD28 alone induced a set of short-lived early response transcripts in both Jurkat T cells and primary CD4 T cells, thus providing evidence that CD28 engagement can affect gene regulation independently of TCR engagement.

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