Publications by authors named "Suman Dash"

Saccharomyces cerevisiae meiosis-specific Hop1, a structural constituent of the synaptonemal complex, also facilitates the formation of programmed DNA double-strand breaks and the pairing of homologous chromosomes. Here, we reveal a serendipitous discovery that Hop1 possesses robust DNA-independent ATPase activity, although it lacks recognizable sequence motifs required for ATP binding and hydrolysis. By leveraging molecular docking combined with molecular dynamics simulations and biochemical assays, we identified an ensemble of five amino acid residues in Hop1 that could potentially participate in ATP-binding and hydrolysis.

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This article explores possible future initiatives, such as the development of targeted breeding and integrated omics approach to boost kodo millet production, nutritional value, and environmental adaptation. Kodo millet is grouped under the genus Paspalum and family Gramineae. It is a tropical African crop that was initially domesticated in India approximately 3000 years ago.

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During skeletal muscle adaptation to physiological or pathophysiological signals, contractile apparatus and mitochondrial function are coordinated to alter muscle fiber type. Although recent studies have identified various factors involved in modifying contractile proteins and mitochondrial function, the molecular mechanisms coordinating contractile and metabolic functions during muscle fiber transition are not fully understood. Using a gene-deficient mouse approach, our previous studies uncovered that vestigial-like family member 2 (Vgll2), a skeletal muscle-specific transcription cofactor activated by exercise, is essential for fast-to-slow adaptation of skeletal muscle.

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Article Synopsis
  • *In yeast cells lacking the Irc20 gene (irc20∆), there was a statistically significant increase in LOH events, especially with short and long tracts, compared to wild-type cells after multiple mitotic divisions.
  • *Irc20 appears to specifically influence mitotic recombination without impacting the frequency of meiotic crossovers, highlighting its role in regulating LOH patterns in yeast.*
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This article explores possible future initiatives, such as the development of targeted breeding and integrated omics approach to boost little millet production, nutritional value, and environmental adaptation. Little millet (P. sumatrense) is a staple grain in many parts of Asia and Africa owing to its abundance in vitamins and minerals and its ability to withstand harsh agro-ecological conditions.

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Article Synopsis
  • Pancreatic ductal adenocarcinoma (PDAC) is highly lethal, with rising 5-year survival but persistent high mortality; gemcitabine-based treatments face increasing drug resistance issues.
  • The study identifies MYC/glutamine dependency and low deoxycytidine kinase (DCK) expression as key factors in gemcitabine resistance, linked to enhanced oxidative phosphorylation (OXPHOS) and abnormal mitochondrial function in PDAC cells.
  • DCK inactivation leads to reduced reactive oxygen species and altered gene expression, suggesting that targeting mitochondrial metabolism with specific inhibitors, like venetoclax, could be a promising therapy to overcome treatment resistance in PDAC. *
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Meiotic crossovers are initiated from programmed DNA double-strand breaks. The Msh4-Msh5 heterodimer is an evolutionarily conserved mismatch repair-related protein complex that promotes meiotic crossovers by stabilizing strand invasion intermediates and joint molecule structures such as Holliday junctions. In vivo studies using homozygous strains of the baker's yeast Saccharomyces cerevisiae (SK1) show that the Msh4-Msh5 complex associates with double-strand break hotspots, chromosome axes, and centromeres.

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Unlabelled: Pancreatic ductal adenocarcinoma (PDAC) is one of the most life-threatening malignancies. Although the deoxycytidine analog gemcitabine has been used as the first-line treatment for PDAC, the primary clinical challenge arises because of an eventual acquisition of resistance. Therefore, it is crucial to elucidate the mechanisms underlying gemcitabine resistance to improve treatment efficacy.

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  • A study found significant variation in mutation rates within different strains of yeast, specifically hybrid and homozygous types.
  • The research indicated that loss of heterozygosity (LOH) was more extensive in the hybrid strains S288c/YJM789 and S288c/RM11-1a, with S/Y showing longer LOH tracts and other chromosomal changes.
  • Additionally, the study revealed up to a sixfold difference in single nucleotide mutation rates between the hybrid strains, highlighting important genetic diversity.
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Osteosarcoma (OS) is the most common malignant bone tumor and a leading cause of cancer-related deaths in children and adolescents. Current standard treatments for OS are a combination of preoperative chemotherapy, surgical resection, and adjuvant chemotherapy. Cisplatin is used as the standard chemotherapeutic for OS treatment, but it induces various adverse effects, limiting its clinical application.

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