Publications by authors named "Stephen Francis"

Background: Temozolomide (TMZ) treatment has demonstrated, but variable, impact on glioma prognosis. This study examines associations of survival with DNA repair gene germline polymorphisms among glioma patients who did and did not have TMZ treatment. Identifying genetic markers which sensitize tumor cells to TMZ could personalize therapy and improve outcomes.

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Background: Previous epidemiologic studies have reported an association of serum immunoglobulin E (IgE) levels with reduced glioma risk, but the association between IgE and glioma prognosis has not been characterized. This study aimed to examine how sex, tumor subtype, and IgE class modulate the association of serum IgE levels with glioma risk and survival.

Methods: We conducted a case-control study using participants from the University of California, San Francisco Adult Glioma Study (1997-2010).

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Background: Temozolomide (TMZ) treatment has demonstrated, but variable, impact on glioma prognosis. This study examines associations of survival with DNA repair gene germline polymorphisms among glioma patients who did and did not have TMZ treatment. Identifying genetic markers which sensitize tumor cells to TMZ could personalize therapy and improve outcomes.

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Background: Variations in survival among patients with oligodendroglioma are unexplained by known prognostic factors. To assess the impact of peripheral immune profiles on prognosis, we applied immunomethylomics analyses-DNA methylation of archived whole blood samples, to characterize immune cells.

Methods: We compared the proportions of immune cells from patients with oligodendroglioma to other glioma subtypes and controls.

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Article Synopsis
  • Polygenic risk scores (PRS) analyze multiple genetic variants to profile individual susceptibility to glioma, highlighting a need for efficient genetic risk assessment due to limited sample sizes in studies.
  • The research compared two PRS methods: one incorporating over 1 million variants (PRS-CS) and another limiting to significant variants (PRS-CT), finding PRS-CS more predictive, especially for glioblastoma.
  • Overall, PRS-CS significantly increased predictive accuracy and classification of high-risk individuals, suggesting its potential to better identify glioma subtypes and improve risk detection in clinical settings.
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Background: Previous epidemiologic studies have reported an association of serum immunoglobulin E (IgE) levels with reduced glioma risk, but the association between IgE and glioma prognosis has not been characterized. This study aimed to examine how sex, tumor subtype, and IgE class modulate the association of serum IgE levels with glioma risk and survival.

Methods: We conducted a case-control study using participants from the University of California, San Francisco Adult Glioma Study (1997-2010).

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The beamline optics and endstations at branch B of the Versatile Soft X-ray (VerSoX) beamline B07 at Diamond Light Source are described. B07-B provides medium-flux X-rays in the range 45-2200 eV from a bending magnet source, giving access to local electronic structure for atoms of all elements from Li to Y. It has an endstation for high-throughput X-ray photoelectron spectroscopy (XPS) and near-edge X-ray absorption fine-structure (NEXAFS) measurements under ultrahigh-vacuum (UHV) conditions.

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Article Synopsis
  • Researchers developed a new polygenic risk score (PRS-CS) that leverages data from over 1 million genetic variants to assess glioma risk more accurately than traditional methods.
  • The study found that PRS-CS significantly improved risk prediction across glioma subtypes, particularly for glioblastoma, showing a 21% increase in explained variance compared to an older approach (PRS-CT).
  • This scoring method could enhance the clinical identification of high-risk individuals and aid in differentiating glioma subtypes based on genetics, which may be beneficial for patient management.
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  • * A genome-wide association study (GWAS) was conducted on participants who received COVID-19 vaccines, revealing that certain human leukocyte antigen (HLA) alleles, particularly HLA-DRB113:02, are associated with better antibody responses.
  • * The findings highlight the role of specific genetic factors in vaccine response and suggest that understanding these variations can help improve vaccination strategies for better protection against COVID-19 across different populations.
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  • * A recent analysis of 3,418 glioma cases found that a higher platelet to lymphocyte ratio (PLR) increased glioma risk, particularly in specific tumor subtypes, while higher lymphocyte and neutrophil counts were linked to reduced risk, suggesting a potential role of genetics in immune surveillance.
  • * Although certain blood cell traits did not correlate with survival in most glioma cases, increased lymphocyte counts were associated with higher mortality in a specific tumor subtype, revealing new insights into immune mechanisms that could affect glioma treatment and management.
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The Brain Tumor Epidemiology Consortium (BTEC) is an international organization that fosters collaboration among scientists focused on understanding the epidemiology of brain tumors with interests ranging from the etiology of brain tumor development and outcomes to the control of morbidity and mortality. The 2022 annual BTEC meeting with the theme "Pediatric Brain Tumors: Origins, Epidemiology, and Classification" was held in Lyon, France on June 20 - 22, 2022. Scientists from North America and Europe presented recent research and progress in the field.

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Background: Lifetime exposure to the varicella-zoster virus (VZV) has been consistently inversely associated with glioma risk, however, the relationship of VZV with survival in adults with glioma has not been investigated. In this study, we analyzed the survival of adults with glioma in relation to their antibody measurements to 4 common herpes viral infections, including VZV, measured post-diagnosis.

Methods: We analyzed IgG antibody measurements to VZV, cytomegalovirus (CMV), herpes simplex virus 1/2 (HSV), and Epstein-Barr virus (EBV) collected from 1378 adults with glioma diagnosed between 1991 and 2010.

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Children, adolescents, and young adults (CAYA) with relapsed/refractory (R/R) classic Hodgkin lymphoma (cHL) without complete metabolic response (CMR) before autologous hematopoietic cell transplantation (auto-HCT) have poor survival outcomes. CheckMate 744, a phase 2 study for CAYA (aged 5-30 years) with R/R cHL, evaluated a risk-stratified, response-adapted approach with nivolumab plus brentuximab vedotin (BV) followed by BV plus bendamustine for patients with suboptimal response. Risk stratification was primarily based on time to relapse, prior treatment, and presence of B symptoms.

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Introduction: The accurate identification of mucinous pancreatic cystic lesions (PCLs) is paramount for cancer risk stratification. Cyst fluid carcinoembryonic antigen (CEA), the only routinely used test, requires high volumes and has low sensitivity. We aimed to compare the performance of two investigational small-volume biomarkers, glucose and the protease gastricsin, to CEA for PCL classification.

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Introduction: Although immunosuppression is a known characteristic of glioma, no previous large studies have reported peripheral blood immune cell profiles prior to patient surgery and chemoradiation. This report describes blood immune cell characteristics and associated variables prior to surgery among typical glioma patients seen at a large University practice.

Methods: We analyzed pre-surgery blood samples from 139 glioma patients diagnosed with a new or recurrent grade II/III glioma (LrGG, n = 64) or new glioblastoma (GBM, n = 75) and 454 control participants without glioma.

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Article Synopsis
  • Glioma is a deadly type of cancer that may be influenced by genetic factors and infections, with recent studies showing mixed evidence on the role of infections in glioma risk.
  • Researchers used genetic predictors to examine the association between immune response to specific viral antigens and glioma risk and survival in a large study group of over 3,400 glioma patients and 8,100 controls.
  • They found that certain immune responses to viruses, like Epstein-Barr and Merkel cell polyomavirus, were linked to glioma risk and survival outcomes, and they identified a specific HLA allele associated with a reduced risk of glioma, suggesting the potential for antiviral therapies in treatment.
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Purpose Of Review: Brain and other central nervous system (CNS) tumors, while rare, cause significant morbidity and mortality across all ages. This article summarizes the current state of the knowledge on the epidemiology of brain and other CNS tumors.

Recent Findings: For childhood and adolescent brain and other CNS tumors, high birth weight, non-chromosomal structural birth defects and higher socioeconomic position were shown to be risk factors.

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This article reviews the current epidemiology of central nervous system tumors. Population-level basic epidemiology, nationally and internationally, and current understanding of germline genetic risk are discussed, with a focus on known and well-studied risk factors related to the etiology of central nervous system tumors.

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To unravel the source of SARS-CoV-2 introduction and the pattern of its spreading and evolution in the United Arab Emirates, we conducted meta-transcriptome sequencing of 1067 nasopharyngeal swab samples collected between May 9th and Jun 29th, 2020 during the first peak of the local COVID-19 epidemic. We identified global clade distribution and eleven novel genetic variants that were almost absent in the rest of the world and that defined five subclades specific to the UAE viral population. Cross-settlement human-to-human transmission was related to the local business activity.

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Purpose: Childhood central nervous system (CNS) tumors are the leading cause of cancer mortality in children. Previous studies have suggested that some childhood cancers, including primary CNS tumors, may be associated with higher socioeconomic status (SES).

Methods: We linked data from the California Cancer Registry to California birth records for children (age 0-19 years) diagnosed with primary CNS tumors during 1988-2011 and analyzed multiple measures of parental SES around the birth of their children and subsequent risk for childhood CNS tumors.

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