Publications by authors named "Stefan Schwenk"

Article Synopsis
  • - The researchers developed a new method called Pore-C, which combines chromatin conformation capture with nanopore sequencing to study high-order 3D interactions among genomic loci across the genomes of human cell lines.
  • - They created a statistical tool named Chromunity to identify 'synergies', or sets of genomic loci that have an increased frequency of high-order contacts, particularly in active chromatin regions like enhancers and promoters.
  • - Applying these techniques revealed that such high-order interactions are vital for gene regulation in various contexts, including prostate and breast cancer, highlighting the link between 3D genome structure and lineage-specific transcriptional programs.
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Since the turn of the millenium, RNA-based control of gene expression has added an extra dimension to the central dogma of molecular biology. Still, the roles of Mycobacterium tuberculosis regulatory RNAs and the proteins that facilitate their functions remain elusive, although there can be no doubt that RNA biology plays a central role in the baterium's adaptation to its many host environments. In this review, we have presented examples from model organisms and from M.

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The success of Mycobacterium tuberculosis relies on the ability to switch between active growth and non-replicating persistence, associated with latent TB infection. Resuscitation promoting factors (Rpfs) are essential for the transition between these states. Rpf expression is tightly regulated as these enzymes are able to degrade the cell wall, and hence potentially lethal to the bacterium itself.

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Mycobacterium tuberculosis depends on the ability to adjust to stresses encountered in a range of host environments, adjustments that require significant changes in gene expression. Small RNAs (sRNAs) play an important role as post-transcriptional regulators of prokaryotic gene expression, where they are associated with stress responses and, in the case of pathogens, adaptation to the host environment. In spite of this, the understanding of M.

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Haemophilus influenzae is a significant causative agent of respiratory tract infections (RTI) worldwide. The development of a rapid H. influenzae diagnostic assay that would allow for the implementation of infection control measures and also improve antimicrobial stewardship for patients is required.

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