Publications by authors named "Sravya Ganesh"

Dutch-type cerebral amyloid angiopathy (D-CAA), also known as hereditary cerebral haemorrhage with amyloidosis-Dutch type (HCHWA-D), is an autosomal dominant disorder caused by a G to C transversion in codon 693 of the amyloid precursor protein (APP) that results in a Gln-to-Glu amino acid substitution. CRISPR-Cas9 editing was used for genetic correction of the mutation in a human induced pluripotent stem cell (hiPSC-) line established previously. The isogenic hiPSCs generated showed typical pluripotent stem cell morphology, expressed all markers of undifferentiated state, displayed a normal karyotype and had the capacity to differentiate into the three germ layers.

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Background: During skeletal muscle regeneration, satellite stem cells use distinct pathways to repair damaged myofibers or to self-renew by returning to quiescence. Cellular/mitotic quiescence employs mechanisms that promote a poised or primed state, including altered RNA turnover and translational repression. Here, we investigate the role of mRNP granule proteins Fragile X Mental Retardation Protein (Fmrp) and Decapping protein 1a (Dcp1a) in muscle stem cell quiescence and differentiation.

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Arrhythmogenic Cardiomyopathy (ACM) is a rare genetic cardiac disease predominantly associated with mutations in genes of the desmosomes and characterized by arrhythmia and fibro-fatty replacement of the myocardium. We generated human induced pluripotent stem cells (hiPSCs) from one patient affected by ACM carrying the heterozygous c.1643delG (p.

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Article Synopsis
  • Tens of thousands of long non-coding RNA (lncRNA) genes exist, but only a few have established functions, especially in mouse oocytes where the role of lncRNAs like Sirena1 was previously unknown.
  • Sirena1, the most expressed lncRNA in mouse oocytes, has evolved functions in RNA interference and is involved in regulating maternal mRNA through unique mechanisms, despite not affecting fertility directly.
  • Knock-out studies show that while Sirena1 alters the maternal transcriptome and affects mitochondrial organization, it highlights the complex evolutionary role of lncRNAs which may not translate to significant laboratory impacts.
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Article Synopsis
  • * A study found that LTRs from the ERVL retrotransposon class significantly influence gene expression during the oocyte-to-embryo transition in various species, including mice and humans, by activating transcription and altering gene sequences.
  • * The research highlights that ERVL LTRs can recycle genetic material, such as pseudogenes into functional RNAs, and even contribute to the evolution of new genes, demonstrating their vast potential for reshaping genome expression and evolution.
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The oocyte-to-embryo transition (OET) transforms a differentiated gamete into pluripotent blastomeres. The accompanying maternal-zygotic RNA exchange involves remodeling of the long non-coding RNA (lncRNA) pool. Here, we used next generation sequencing and de novo transcript assembly to define the core population of 1,600 lncRNAs expressed during the OET (lncRNAs).

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Over a half of mammalian genomes is occupied by repetitive elements whose ability to provide functional sequences, move into new locations, and recombine underlies the so-called genome plasticity. At the same time, mobile elements exemplify selfish DNA, which is expanding in the genome at the expense of the host. The selfish generosity of mobile genetic elements is in the center of research interest as it offers insights into mechanisms underlying evolution and emergence of new genes.

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