Publications by authors named "Song Wu"

Background: Distant metastasis of gastric cancer can seriously affect the treatment strategy of gastric cancer patients, so it is essential to identify patients at high risk of distant metastasis of gastric cancer earlier.

Method: In this study, we retrospectively collected research data from 18,472 gastric cancer patients from the SEER database. We applied six machine learning algorithms to construct a model that can predict distant metastasis of gastric cancer.

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Cisplatin-based neoadjuvant chemotherapy is first-line strategy to inhibit progression and metastasis of muscle-invasive bladder cancer (MIBC). However, its clinical efficacy is often limited by drug resistance and severe systemic side effects, highlighting the urgent need for innovative therapeutic approaches. Despite advancements in cisplatin-based regimens, research on intravesical cisplatin delivery systems remains scarce.

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The phase structure information of high-entropy alloys (HEAs) is critical for their design and application, as different phase configurations are associated with distinct chemical and physical properties. However, the broad range of elements in HEAs presents significant challenges for precise experimental design and rational theoretical modeling and simulation. To address these challenges, machine learning (ML) methods have emerged as powerful tools for phase structure prediction.

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Breast cancer (BC) often spreads to bones, leading to bone metastasis (BM). Current targeted therapies have limited effectiveness in the treatment of this condition. Osteoclasts, which contribute to bone destruction, are crucial in supporting tumor cell growth in the bones.

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Staphylocoagulase (Coa) plays a critical role in the pathogenicity of Staphylococcus aureus (S. aureus). The present study was undertaken to investigate the underlying mechanism which helicid (HEL) suppressed the virulence factor Coa, as well as to assess the synergistic inhibitory effects of HEL in conjunction with antibiotics, thereby establishing the potential of HEL as an antibacterial adjuvant.

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Background And Purpose: Bladder cancer has high recurrence rates despite standard treatments, necessitating innovative therapeutic approaches. This study introduces magnetically powered microrobots utilizing Traditional Chinese Medicine (TCM) Spora Lygodii (SL) encapsulated with Doxorubicin (DOX) and FeO nanoparticles (Fe/DOX@SL) for targeted therapy.

Methods: FeO nanoparticles were synthesized via co-precipitation and combined with SL spores and DOX through dip-coating to form Fe/DOX@SL microrobots.

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Introduction: Urolithiasis is characterized by a high morbidity and recurrence rate, primarily attributed to metabolic disorders. The identification of more metabolic biomarkers would provide valuable insights into the etiology of stone formation and the assessment of disease risk. The present study aimed to seek potential organic acid (OA) biomarkers from morning urine samples and explore new methods based on machine learning (ML) for metabolic risk prediction of urolithiasis.

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Background: Triple-negative breast cancer (TNBC) is the most aggressive subtype of breast cancer. Previous studies have found that fibroblast growth factor receptor 4 (FGFR4) plays a crucial role in tumor development and metastasis. However, the potential role and underlying mechanisms of FGFR4 in the progression of TNBC remain unclear.

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With the tremendous success of the PARP inhibitor olaparib in clinical practice, synthetic lethality has become an important field for the discovery and development of anticancer drugs. More and more synthetic lethality targets have been discovered with the rapid development of biotechnology in recent years. Currently, many drug candidates that were designed and developed on the basis of the concept of synthetic lethality have entered clinical trials.

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Macromolecules can gain special properties by adopting knotted conformations, but engineering knotted macromolecules is a challenging task. Here, we unexpectedly find that knots can be efficiently generated in active polymer systems. When one end of an actively reptative polymer is anchored, it undergoes continual self-knotting as a result of intermittent giant conformation fluctuations and the outward reptative motion.

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The development of a rapid and convenient strategy to regulate the surface microenvironment of inert carbon supports, along with the physicochemical properties of their supported metal nanoparticles, is essential for enhancing catalytic performance. In this study, we describe a straightforward and efficient solid-state microwave method that utilizes a household microwave oven to achieve the co-doping of oxygen and nitrogen in unfunctionalized carbon black (ONCB) using urea as a nitrogen source. The microwave solid-state treatment of commercial carbon black (CB) with urea not only introduces a significant number of heteroatomic functional groups but also substantially increases the pore size and pore volume of the matrix.

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Objective: Metastasis of non-small cell lung cancer (NSCLC) is a leading cause of high mortality. In recent years, the role of M2 macrophages in promoting tumor metastasis within the tumor microenvironment has garnered increasing attention. This study aims to investigate the role and potential mechanisms of the ITGB4/GNB5 axis in regulating M2 macrophage reprogramming and influencing NSCLC metastasis.

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The pervasive use of the plasticizer di(2-ethylhexyl) phthalate (DEHP) poses potential risks to global aquatic ecosystems. This study systematically evaluated the adverse effects of chronic exposure to environmentally relevant concentrations of DEHP on gill tissues of crucian carp, utilizing histological examination, metabolomic, and transcriptomic analysis. The results demonstrated that DEHP induced significant histopathological alterations in gill tissues, with significant enrichment observed in multiple pathways associated with amino acid, hormone, lipid, and xenobiotic metabolism.

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Objective: This study aims to explore the optimal predictors of HBV-associated HCC using Lasso, and establish a prediction model.

Methods: A retrospective analysis was conducted on patients who underwent CBC and CRP testing between January 2016 and March 2024. The study population comprised 5441 cases divided into three cohorts: non-HBV-infected (1333 cases), HBV-infected (1023 cases), and HBV-associated HCC (3085 cases).

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Background: There is a paucity of confirmatory randomized controlled trials (RCTs) comparing the effectiveness of totally laparoscopic distal gastrectomy (TLDG) vs laparoscopy-assisted distal gastrectomy (LADG) for early gastric cancer (EGC).

Methods: A phase III, prospective, multi-center RCT was conducted, wherein patients (n = 442) with clinical stage I gastric cancer eligible for laparoscopic distal gastrectomy were randomized 1:1 to the TLDG or the LADG group. Postoperative morbidity and quality of life (QoL) were compared.

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Plasma protein binding (PPB) is closely related to pharmacokinetics, pharmacodynamics and drug toxicity. Existing models for predicting PPB often suffer from low prediction accuracy and poor interpretability, especially for high PPB compounds, and are most often not experimentally validated. Here, we carried out a strict data curation protocol, and applied consensus modeling to obtain a model with a coefficient of determination of 0.

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Erythropoiesis is a finely regulated and complex process that involves multiple transformations from hematopoietic stem cells to mature red blood cells at hematopoietic sites from the embryonic to the adult stages. Investigations into its molecular mechanisms have generated a wealth of expression data, including bulk and single-cell RNA sequencing data. A comprehensively integrated and well-curated erythropoiesis-specific database will greatly facilitate the mining of gene expression data and enable large-scale research of erythropoiesis and erythroid-related diseases.

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Article Synopsis
  • - The study aimed to investigate how electroacupuncture (EA) affects the HIF/VEGF/Notch signaling pathways in rats with cerebral ischemia, focusing on its potential role in enhancing cerebral microangiogenesis and improving brain function.
  • - It included 100 male SD rats, with 15 in a sham group and the remaining 85 subjected to a cerebral ischemia model; various therapies, including EA and specific inhibitors, were administered to study their effects on neurological deficits and brain tissue characteristics.
  • - Results showed significant differences in neurological scores, cerebral infarct volume, microvascular density, and the expression of key proteins related to the signaling pathways in rats treated with EA compared to controls, highlighting the beneficial effects of EA
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  • The rise of antibiotic-resistant bacteria like MRSA has led researchers to explore anti-virulence treatments, moving away from traditional antibiotics.
  • This study found that daphnetin can effectively disrupt MRSA's ability to adhere and invade cells by targeting the enzyme Sortase A (SrtA) and the toxin α-hemolysin (Hla).
  • Daphnetin not only inhibited key MRSA processes such as biofilm formation and hemolysis but also showed potential in protecting against MRSA-induced pneumonia in vivo, making it a promising candidate for treating bacterial infections.
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  • The study investigates the effectiveness of various arthroscopic procedures for treating rotator cuff diseases, focusing on the outcomes of arthroscopic rotator cuff repair compared to other interventions.
  • A total of 1,232 patients from 16 studies were analyzed, revealing that arthroscopic repair significantly improved shoulder function and outperformed other methods, while physiotherapy was more effective for pain relief.
  • The research highlights the need for caution due to moderate bias risks in the included studies and suggests that further evidence is necessary to solidify these conclusions.
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  • Target discovery is essential in drug development, and knowledge graphs (KGs) can enhance this process by organizing complex biological data and uncovering new connections.
  • Researchers created a new knowledge graph, TarKG, which integrates multiple biomedical databases and includes over 1.1 million entities related to diseases, genes, and compounds, aimed specifically at improving target discovery.
  • TarKG facilitates disease-target link predictions and offers a user-friendly web platform for knowledge retrieval, showcasing its utility through case studies involving Alzheimer’s disease and the CSN5 protein.
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  • Yao syndrome (YAOS) is an autoinflammatory disease linked to specific genetic variants, with this study analyzing a large group of adult patients diagnosed with related conditions.
  • Out of 194 patients studied, 152 were diagnosed with YAOS, while the remainder had mixed autoinflammatory diseases, often showing multiple genetic variants.
  • The findings highlight the diverse presentations of YAOS and aim to increase awareness and understanding of this often underrecognized disease among healthcare professionals.
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