Publications by authors named "Sofia Kondratieva"

It is established that BCG vaccination results in the development of both a specific immune response to mycobacterial infections and a nonspecific (heterologous) immune response, designated as trained immunity (TRIM), to other pathogens. We hypothesized that local BCG immunization may induce an early immune response in bone marrow and spleen innate immunity cells. The early transcriptomic response of various populations of innate immune cells, including monocytes, neutrophils, and natural killer (NK) cells, to BCG vaccination was examined.

View Article and Find Full Text PDF

Objectives: Current data suggests that Bacille Calmette-Guerin (BCG) vaccination contributes to nonspecific enhancement of resistance to various infections. Thus, BCG vaccination induces both specific immunity against mycobacteria and non-specific "trained immunity" against various pathogens. To understand the fundamental mechanisms of "trained" immunity, studies of transcriptome changes occurring during BCG vaccination in innate immunity cells, as well as in their precursors, are necessary.

View Article and Find Full Text PDF

Background: Immune checkpoint blockade (ICB) is rapidly becoming a standard of care in the treatment of many cancer types. However, the subset of patients who respond to this type of therapy is limited. Another way to promote antitumoral immunity is the use of immunostimulatory molecules, such as cytokines or T cell co-stimulators.

View Article and Find Full Text PDF
Article Synopsis
  • Aberrant expression of PIWI/piRNA pathway proteins is observed in various tumors, but these proteins are downregulated in testicular germ cell tumors (TGCTs) compared to normal testis.
  • The study utilized advanced sequencing and analysis methods to investigate piRNA activity at different stages of TGCT development, focusing on healthy testis, adjacent tissues, precursor GCNIS, and TGCT cells.
  • Results indicated that while piRNA biogenesis is intact in healthy testis and adjacent tissues, GCNIS and TGCT cells lose PIWI/piRNA pathway expression, though a short isoform of PIWIL2/HILI may still regulate certain transposable elements in TGCTs without typical piRNA biogenesis.
View Article and Find Full Text PDF

PIWI proteins and their partner small RNAs, termed piRNAs, are known to control transposable elements (TEs) in the germline. Here, we provide evidence that in humans this control is exerted in two different modes. On the one hand, production of piRNAs specifically targeting evolutionarily youngest TEs (L1HS, L1PA2-L1PA6, LTR12C, SVA) is present both at prenatal and postnatal stages of spermatogenesis and is performed without involvement of piRNA clusters.

View Article and Find Full Text PDF

Recently, more evidence supporting common nature of promoters and enhancers has been accumulated. In this work, we present data on chromatin modifications and non-polyadenylated transcription characteristic for enhancers as well as results of in vitro luciferase reporter assays suggesting that PIWIL2 alternative promoter in exon 7 also functions as an enhancer for gene PHYHIP located 60Kb upstream. This finding of an intragenic enhancer serving as a promoter for a shorter protein isoform implies broader impact on understanding enhancer-promoter networks in regulation of gene expression.

View Article and Find Full Text PDF
Article Synopsis
  • PIWI pathway proteins are crucial for germ cell development during spermatogenesis and their decreased expression is linked to testicular germ cell tumors (TGCTs).
  • The study focuses on examining not just normal testis and TGCT samples, but also preneoplastic testis tissues next to TGCTs, using matched samples to reduce patient variability.
  • Findings reveal that spermatogenesis remains in tissues near nonseminomas while PIWI gene expression and DNA methylation patterns differ, suggesting distinct developmental pathways for TGCT types and potential for new diagnostic markers.
View Article and Find Full Text PDF

PIWI family proteins have recently emerged as essential contributors in numerous biological processes including germ cell development, stem cell maintenance and epigenetic reprogramming. Expression of some of the family members has been shown to be elevated in tumors. In particular, PIWIL2 has been probed as a potential neoplasia biomarker in many cancers in humans.

View Article and Find Full Text PDF