Publications by authors named "Sofia D Merajver"

Black women experience disproportionate breast cancer-related mortality, with similar overall incidence to White women. Approaches to address these racial health disparities should be multifaceted. Universal genetic counseling and testing for Black women could represent one dimension of a comprehensive approach in guiding early identification of those more likely to experience higher breast cancer-related mortality.

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Circulating tumor cells (CTCs) in the bloodstream are important biomarkers for clinical prognosis of cancers. Current CTC identification methods are based on immuno-labeling, which depends on the differential expression of specific antigens between the cancer cells and white blood cells. Here we present an antigen-independent CTC detection method utilizing a deep-learning-assisted single-cell biolaser.

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Background: Epidermal growth factor receptor (EGFR) and vascular endothelial growth factor receptor (VEGF) play important role in breast tumor growth, invasion, metastasis, patient survival and drug resistance. The aim of this study was to evaluate the protein expression status of EGFR and VEGF-A, as well as their association with hormone receptor status and histopathological characteristics in the invasive type of female breast cancer among Ethiopians.

Method: The primary breast tumor tissues were obtained from 85 Ethiopian invasive breast cancer cases that underwent modified radical mastectomy (MRM) from June 2014 to June 2015.

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  • There is growing recognition that prostate cancer patients often have germline variants that can have significant implications for their health and that of their families, necessitating a deeper understanding of which individuals may carry these variants.
  • A study involving 505 prostate cancer patients was conducted, tracking various factors and evaluating the presence of pathogenic or likely pathogenic (P/LP) germline variants through genetic testing aligned with NCCN guidelines.
  • The study found that the occurrence of P/LP variants was similar across different age groups and clinical characteristics, with only the age at testing in metastatic patients showing a predictive association for these variants, indicating challenges in refining existing clinical guidelines.
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  • * In a seven-year retrospective study, 91 USC patients were analyzed, with nearly half referred for genetic counseling; 56% of these underwent genetic testing.
  • * Findings revealed 12.5% of tested patients had pathogenic variants, and 16.6% had variants of unknown significance, leading to a recommendation for standardizing genetic testing in USC management.
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  • Analyzed molecular profiles in bladder cancer (BC) to find invasive markers that can tailor personalized treatments for patients with advanced or metastatic disease.
  • Developed a less invasive liquid biopsy method using a graphene oxide microfluidic chip to isolate circulating tumor cells (CTCs) from blood samples of BC patients.
  • Found that higher CTC counts correlate with worse survival outcomes and identified gene expression changes related to metastasis and chemotherapy resistance, showcasing the potential of CTCs in assessing prognosis for metastatic BC.
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  • The study focuses on creating patient-derived organoid (PDO) models from muscle-invasive bladder cancer tumors to better predict therapy responses and improve treatment outcomes.
  • Researchers collected tumor samples from bladder cancer patients to develop these PDOs and tested them against various drugs in a lab setting, using advanced molecular profiling techniques to assess their characteristics.
  • The findings showed that short-term PDOs accurately reflect the original tumors and identified potential biomarkers associated with drug responses, particularly for gemcitabine, but further validation of these results is necessary.
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Fatty acid synthesis (FAS) has been shown to play a key role in the survival of brain-metastatic (BM) breast cancer. We demonstrate that the fatty acid synthase inhibitor TVB-2640 synergizes with the topoisomerase inhibitor SN-38 in triple-negative breast cancer (TNBC) BM cell lines, upregulates FAS and downregulates cell cycle progression gene expression, and slows the motility of TNBC BM cell lines. The combination of SN-38 and TVB-2640 warrants further consideration as a potential therapeutic option in TNBC BMs.

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Short amphipathic peptides are capable of binding to transcriptional coactivators, often targeting the same binding surfaces as native transcriptional activation domains. However, they do so with modest affinity and generally poor selectivity, limiting their utility as synthetic modulators. Here we show that incorporation of a medium-chain, branched fatty acid to the N-terminus of one such heptameric lipopeptidomimetic (LPPM-8) increases the affinity for the coactivator Med25 >20-fold (Ki >100 μM to 4 μM), rendering it an effective inhibitor of Med25 protein-protein interactions (PPIs).

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  • High-risk lesions (HRLs) in breast tissue are linked to an increased risk of breast cancer, particularly in patients with gene variants associated with breast cancer predisposition.
  • In a study of patients with germline pathogenic variants (PVs) and HRLs, the majority of lesions were atypical ductal hyperplasia (ADH) and lobular neoplasia (LN), with some patients showing low upgrade rates to malignancy following surgical excision.
  • Overall, patients without upgrades still had a notable 3-year breast cancer risk of 13.1%, mostly for estrogen receptor-positive (ER +) cancer, highlighting the need for potential surgical or preventive measures for those with HRLs and PVs.
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Using dasatinib linked to E3 ligase ligands, we identified a potent and selective dual Csk/c-Src PROTAC degrader. We then replaced dasatinib, the c-Src-directed ligand, with a conformation-selective analogue that stabilizes the αC-helix-out conformation of c-Src. Using the αC-helix-out ligand, we identified a PROTAC that is potent and selective for c-Src.

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CBP/p300 is a master transcriptional coactivator that regulates gene activation by interacting with multiple transcriptional activators. Dysregulation of protein-protein interactions (PPIs) between the CBP/p300 KIX domain and its activators is implicated in a number of cancers, including breast, leukemia, and colorectal cancer. However, KIX is typically considered "undruggable" because of its shallow binding surfaces lacking both significant topology and promiscuous binding profiles.

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  • - The NCCN Guidelines focus on identifying genetic variants that increase the risk of breast, ovarian, pancreatic, and prostate cancers, specifically targeting genes like BRCA1, BRCA2, and TP53.
  • - The updated guidelines now include a section addressing the needs of transgender, nonbinary, and gender diverse individuals regarding cancer risk reduction strategies.
  • - New criteria for testing and managing TP53 pathogenic variants and related risks of Li-Fraumeni syndrome have also been incorporated into the recommendations.
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Unlabelled: The development of novel therapies for brain metastases is an unmet need. Brain metastases may have unique molecular features that could be explored as therapeutic targets. A better understanding of the drug sensitivity of live cells coupled to molecular analyses will lead to a rational prioritization of therapeutic candidates.

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Brain metastases are the most lethal progression event, in part because the biological processes underpinning brain metastases are poorly understood. There is a paucity of realistic models of metastasis, as current murine models are slow to manifest metastasis. We set out to delineate metabolic and secretory modulators of brain metastases by utilizing two models consisting of microfluidic devices: 1) a blood brain niche (BBN) chip that recapitulates the blood-brain-barrier and niche; and 2) a migration chip that assesses cell migration.

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Short amphipathic peptides are capable of binding to transcriptional coactivators, often targeting the same binding surfaces as native transcriptional activation domains. However, they do so with modest affinity and generally poor selectivity, limiting their utility as synthetic modulators. Here we show that incorporation of a medium-chain, branched fatty acid to the N-terminus of one such heptameric lipopeptidomimetic (34913-8) increases the affinity for the coactivator Med25 >10-fold ( >>100 μM to 10 μM).

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  • Recurrent deletions of tumor suppressor genes often unintentionally remove nearby essential genes, creating a dependence on similar genes called paralogues that might be targeted for cancer treatment.
  • The study introduces a new method, called CLIM, to identify these collateral lethal genes, discovering MTHFD2 as a key player in ovarian tumors lacking the UQCR11 gene.
  • MTHFD2 supports vital cellular functions by aiding mitochondrial activity, and its inhibition can lead to tumor remission, indicating its potential as a therapeutic target across various cancer types that share UQCR11 deletions.
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Purpose: Indications for germline testing in prostate cancer patients have expanded substantially over the past decade. With a near-universal shortage of genetic counselors and increasing demand, increased access to genetic counseling is crucial. We sought to prospectively implement and assess a clinician-led approach to genetic counseling and testing.

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Scaffold hopping is a common strategy for generating kinase inhibitors that bind to the DFG-out inactive conformation. Small structural differences in inhibitor scaffolds can have significant effects on potency and selectivity across the kinome, however, these effects are often not studied in detail. Herein, we outline a design strategy to generate an array of DFG-out conformation inhibitors with three different hinge-binders and two DFG-pocket groups.

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Background: Individuals at increased risk for cancer are ascertained at low rates of 1% to 12% in primary care (PC). Underserved populations experience disparities of ascertainment, but data are lacking. INHERET is an online personal and family history tool to facilitate the identification of individuals who are eligible, according to guidelines, to be counseled on germline genetic testing and risk management.

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Examining genetic literacy in families concerned with hereditary breast and ovarian cancer (HBOC) helps understand how genetic information is passed on from individuals who had genetic counseling to their at-risk relatives. This cross-study comparison explored genetic literacy both at the individual and the family level using data collected from three sequential studies conducted in the U.S.

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Mutant isocitrate-dehydrogenase 1 () synthesizes the oncometabolite 2-hydroxyglutarate (2HG), which elicits epigenetic reprogramming of the glioma cells’ transcriptome by inhibiting DNA and histone demethylases. We show that the efficacy of immune-stimulatory gene therapy (TK/Flt3L) is enhanced in gliomas, due to the reprogramming of the myeloid cells’ compartment infiltrating the tumor microenvironment (TME). We uncovered that the immature myeloid cells infiltrating the TME are mainly nonsuppressive neutrophils and preneutrophils.

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Metastases are the leading cause of death in cancer patients. RhoC, a member of the Rho GTPase family, has been shown to facilitate metastasis of aggressive breast cancer cells by influencing motility, invasion, and chemokine secretion, but as yet there is no integrated model of the precise mechanism of how RhoC promotes metastasis. A common phenotypic characteristic of metastatic cells influenced by these mechanisms is dysregulation of cell-cell junctions.

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During aging and neuromuscular diseases, there is a progressive loss of skeletal muscle volume and function impacting mobility and quality of life. Muscle loss is often associated with denervation and a loss of resident muscle stem cells (satellite cells or MuSCs); however, the relationship between MuSCs and innervation has not been established. Herein, we administered severe neuromuscular trauma to a transgenic murine model that permits MuSC lineage tracing.

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