Publications by authors named "Siyuan Mi"

Background: Mastitis caused by Staphylococcus aureus (S. aureus) is one of the most intractable problems for the dairy industry, causing significantly reduced milk yields and early slaughter of cows worldwide. MicroRNAs (miRNAs) can post-transcriptionally regulate gene expression and studies in recent years have shown the importance of miRNA-associated gene regulation in S.

View Article and Find Full Text PDF

Background: There is no significant difference in postoperative follow-up imaging examinations for varying mismatch repair (MMR)/microsatellite instability (MSI) statuses for sporadic colorectal cancer while facing different prognoses.

Methods: We conducted a retrospective study, using Kaplan-Meier curve to compare survival/progression status by varying imaging examination and frequency, using Cox regression to analyze tumor characteristic impact on survival, and monitoring polyp detection time in each colonoscopy screening.

Results: A total of 282 deficient MMR (dMMR)/MSI-high (MSI-H) patients were included.

View Article and Find Full Text PDF
Article Synopsis
  • Lifetime productivity is crucial for dairy cattle, combining factors like production and longevity, which this study aimed to explore in high-producing Chinese Holsteins using extensive milk yield data.
  • Researchers analyzed milk records from over 134,000 cows and integrated genomics and transcriptomics to estimate genetic parameters and identify candidate genes linked to lifetime productivity.
  • Key findings showed an average lifetime milk yield of about 24,800 kg and moderate heritability estimates, with significant genetic correlations between lifetime milk yield and traits like udder depth and attachment, revealing potential genetic factors influencing dairy cow productivity.
View Article and Find Full Text PDF
Article Synopsis
  • Staphylococcus aureus (S. aureus) mastitis causes economic issues in dairy farming, and understanding its biological effects is important for prevention; lipoteichoic acid (aLTA) plays a key role but its influence on cell death in bovine mammary cells has not been fully studied.
  • Research found that while low concentrations of aLTA reduced apoptosis and necrosis, high concentrations increased cell death, and folic acid (FA) can mitigate the harmful effects of high aLTA levels by affecting gene expression related to apoptosis.
  • The findings suggest that aLTA interacts with the NR4A gene family, influencing various biological pathways linked to inflammation and cell survival, and the expression patterns of NR4
View Article and Find Full Text PDF

Background: This study aimed to analyze the effect of proximal neck angulation on the biomechanical indices of abdominal aortic aneurysms (AAA) and to investigate its impact on the risk of AAA rupture.

Methods: CT angiography (CTA) data of patients with AAA from January 2015 to January 2022 were collected. Patients were divided into three groups based on the angle of the proximal neck: Group A (∠β ≤ 30°), Group B (30°<∠β ≤ 60°), and Group C (∠β > 60°).

View Article and Find Full Text PDF

Background: LARC patients commonly receive adjuvant therapy, however, hidden micrometastases still limit the improvement of OS. This study aims to investigate the impact of VASN in rectal cancer with pulmonary metastasis and understand the underlying molecular mechanisms to guide adjuvant chemotherapy selection.

Methods: Sequencing data from rectal cancer patients with pulmonary metastasis from Sun Yat-sen University Cancer Center (SYSUCC) and publicly available data were meticulously analyzed.

View Article and Find Full Text PDF
Article Synopsis
  • Pigs are vital for human protein intake and food security, but infectious diseases threaten pig farming and human health; PBMCs are key immune cells in pigs that help resist these diseases.
  • By analyzing RNA-seq data from pig PBMCs exposed to different immune stimuli, the study found specific genes associated with individual pathogens and highlighted their roles in inflammatory and immune responses.
  • The research identified genes linked to immune traits and potential metabolic diseases in both pigs and humans, enhancing our understanding of pig immune responses and potential implications for human health.
View Article and Find Full Text PDF
Article Synopsis
  • - The study focused on identifying regulatory genetic variants in Holstein cows during early to mid-lactation, examining how these variants influence gene expression and splicing related to milk production traits.
  • - Researchers analyzed whole blood samples from 101 cows, discovering a significant number of expressed genes and intron clusters, with specific SNP-gene expression pairs that could affect traits like milk and fat yield.
  • - A notable finding was the identification of a key SNP (rs109421300) linked to the DGAT1 gene, which may serve as an important marker for enhancing milk yield and other related traits during lactation.
View Article and Find Full Text PDF

Objective: RNA epigenetic modifications play an important role in regulating immune response of mammals. Bovine mastitis induced by Staphylococcus aureus (S. aureus) is a threat to the health of dairy cattle.

View Article and Find Full Text PDF
Article Synopsis
  • Folic acid, a B vitamin, is crucial for the immune system and metabolic health of dairy cows, but its natural production by microbes is insufficient for high-yielding cows, leading to issues like subclinical mastitis.
  • This study found that folic acid supplementation influences the expression of long non-coding RNAs (lncRNAs) and affects pathways related to inflammation and immune response in cows with subclinical mastitis.
  • Specifically, the lncRNA MSTRG.11108.1 was highlighted for regulating genes that are important for immune functions, suggesting that folic acid could be beneficial for improving immune health in affected dairy cows.
View Article and Find Full Text PDF
Article Synopsis
  • - The study focuses on the significance of bull semen quality, particularly sperm motility, for selecting superior bulls in dairy production, and explores how environmental factors and seminal plasma affect sperm cell function through genetic mechanisms.
  • - Researchers divided 53 Holstein bulls into high and low sperm motility groups based on the number of motile sperm per ejaculate, identifying 1,099 differentially expressed genes correlating with motility that are mainly involved in energy metabolism and transcription.
  • - The analysis revealed key metabolic pathways, such as aminoacyl-tRNA biosynthesis and vitamin B6 metabolism, and identified 14 candidate genes, including FBXO39, which could serve as markers for assessing sperm motility in bulls.
View Article and Find Full Text PDF

The purpose of this study was to investigate the mechanism for the differences in heat-induced gel properties of egg white proteins with different interior quality during ageing in laying hens. Quantitative proteomic analysis revealed that the abundance of ovotransferrin, avidin, mucin 5B, and clusterin increased with decreasing Haugh units (HU), leading to the transition from disorder to order in the secondary and tertiary structure of egg white proteins, with the burial of hydrophobic groups and a reduction in the negative charge on the protein surface, rendering the egg white protein solution aggregated. These changes would accelerate the rate of aggregation of egg white proteins during heating, resulting in the loss of orientation of the molecular chains, forming coarse and porous gel structures and poor gel properties.

View Article and Find Full Text PDF
Article Synopsis
  • * Utilizes a genome-wide association study (GWAS) and weighted gene co-expression network analyses (WGCNA) on a large dataset of Holstein cows to pinpoint 46 candidate genes, with 11 genes overlapping in differential expression analyses.
  • * Highlights specific pathways related to metabolism and fat regulation, noting that genes like NID2, STARD3, and others are critical; the findings can aid in management and breeding strategies for dairy cattle.
View Article and Find Full Text PDF

Subclinical bovine mastitis is a pathogenic infection of the breast characterized by a marked decrease in milk production and quality. As it has no obvious clinical symptoms, diagnosis and treatment are challenging. Therefore, searching for biomarkers in cows' peripheral white blood cells is valuable for preventing and treating subclinical mastitis.

View Article and Find Full Text PDF

N6-methyladenosine (m6A) is the most functionally important epigenetic modification in RNA. The m6A modification widely exists in mRNA and noncoding RNA, influences the mRNA processing, and regulates the secondary structure and maturation of noncoding RNA. Studies showed the important regulatory roles of m6A modification in animal's complex traits, such as development, immunity, and reproduction-related traits.

View Article and Find Full Text PDF

Objective: Abnormally increased somatic cell counts (SCCs) in milk is usually a sign of bovine subclinical mastitis. Mutual interaction between the host and its associated microbiota plays an important role in developing such diseases. The main objective of this study was to explore the difference between cows with elevated SCCs and healthy cattle from the perspective of host-microbe interplay.

View Article and Find Full Text PDF

Hepatic epithelioid hemangioendothelioma (HEHE) is a very rare vascular endothelial cell tumor, which lacks typical clinical manifestations and specificity of imaging features. Whether the background of fatty liver and the difference in Contrast enhanced ultrasound (CEUS) characteristics between large and small lesions has not been well defined. In this case reports, we described the ultrasound image features of three patients with HEHE.

View Article and Find Full Text PDF

Background: Staphylococcus aureus (S. aureus) mastitis is one of the most difficult diseases to treat in lactating dairy cows worldwide. S.

View Article and Find Full Text PDF

Mastitis caused by () infection is one of the most difficult diseases to treat in dairy cattle. Exploring the biological progression of mastitis via the interaction between host, pathogen, and environment is the key to an effective and sustainable improvement of animal health. Here, two strains of and a strain of MRSA (Methicillin-resistant ) isolated from cows with different inflammation phenotypes were used to challenge Mac-T cells and to investigate their effects on the global transcriptome of the cells, then to explore the potential regulatory mechanisms of folic acid on mastitis prevention.

View Article and Find Full Text PDF

Identifying epigenetic changes is essential for an in-depth understanding of phenotypic diversity and pigs as the human medical model for anatomizing complex diseases. Abnormal sperm DNA methylation can lead to male infertility, fetal development failure, and affect the phenotypic traits of offspring. However, the whole genome epigenome map in pig sperm is lacking to date.

View Article and Find Full Text PDF

Background: Long non-coding RNAs (lncRNAs) play crucial roles in gene regulation at the transcriptional and post-transcriptional levels. LncRNAs are belonging to a large class of transcripts with ≥200 nt in length which do not code for proteins, have been widely investigated in various physiological and pathological contexts by high-throughput sequencing techniques and bioinformatics analysis. However, little is known about the regulatory mechanisms by which lncRNAs regulate genes that are associated with Enterotoxigenic Escherichia coli F4 fimbriae (ETEC-F4ac) adhesion phenotype in small intestine epithelial cells of Large White piglets.

View Article and Find Full Text PDF

Heat stress (HS) is challenging in humans and animals as it is a complicated regulatory mechanism. This prompted us to characterize the physiological and molecular responses of a HS-animal model. In this study, a rat model system was developed by using three temperature treatments (40 ℃, 42 ℃, and 43 ℃) and sixteen biochemical indicators in blood at 42 ℃ for 30 min (H30), 60 min (H60), and 120 min (H120).

View Article and Find Full Text PDF

Perinatal period is the critical time in dairy cattle due to negative energy balance and high milk production stress. Being a key role in biosynthesis and methylation cycle, folic acid is considered essential for lactational and metabolic performance in dairy cattle. Thus, the current study was designed to evaluate the effect of folic acid supplementation on milk production phenotypic traits in periparturient cows.

View Article and Find Full Text PDF

Improving the production traits and resistance against mastitis in dairy cattle is a challenge for animal scientists across the globe. The present study was designed to investigate the genetic effects of single nucleotide polymorphisms (SNPs) in Janus kinase 2 (JAK2) and diacylglycerol acyltransferase (DGAT1) genes with production and mastitis-related traits. Four SNPs in JAK2 and one in DGAT1 were analyzed through Chinese Cow's SNPs Chip-I (CCSC-I) and genotyped in a population of 312 Chinese Holsteins.

View Article and Find Full Text PDF

A PHP Error was encountered

Severity: Warning

Message: fopen(/var/lib/php/sessions/ci_session9oncrs56eh1fv2utv1kub8c1ekh5cnsj): Failed to open stream: No space left on device

Filename: drivers/Session_files_driver.php

Line Number: 177

Backtrace:

File: /var/www/html/index.php
Line: 316
Function: require_once

A PHP Error was encountered

Severity: Warning

Message: session_start(): Failed to read session data: user (path: /var/lib/php/sessions)

Filename: Session/Session.php

Line Number: 137

Backtrace:

File: /var/www/html/index.php
Line: 316
Function: require_once