Publications by authors named "Sitong Wu"

Vision transformers have gained popularity recently, leading to the development of new vision backbones with improved features and consistent performance gains. However, these advancements are not solely attributable to novel feature transformation designs; certain benefits also arise from advanced network-level and block-level architectures. This paper aims to identify the real gains of popular convolution and attention operators through a detailed study.

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Background: Sarcomatoid differentiation is an invasive dedifferentiated feature of tumor and associated with poor prognosis in renal cell carcinoma (RCC) patients. This study aimed to evaluate the utility of F-FDG PET/CT in predicting sarcomatoid differentiation in RCC and its potential prognostic value.

Results: This retrospective study assessed newly diagnosed sarcomatoid differentiation renal cell carcinoma (SDRCC) patients who were staged using F-FDG PET/CT.

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Theaflavins (TFs), specific polyphenolic compounds found in tea, including TF, TF-3-G, TF-3'-G, and TFDG, are renowned for their health-promoting effects. The growing interest in TFs among researchers necessitates a comprehensive review of their properties and impacts. This review systematically examines the chemical and physical properties of TFs, covering their isolation, purification, synthesis, safety, and bioavailability, as well as their implications for health.

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Induction electric field (IEF) technology is a new green treatment technology based on electric field, and its application has not been widely reported, especially in the direction of soybean protein isolate (SPI) modification. Therefore, IEF and several commonly used physical modification methods were used to investigate the effect on the structure and interfacial properties of SPI. The IEF treatment was found to be superior to the other groups in terms of emulsification performance, solubility and flexibility, which were enhanced by 44.

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Bifunctional molecules such as targeted protein degraders induce proximity to promote gain-of-function pharmacology. These powerful approaches have gained broad traction across academia and the pharmaceutical industry, leading to an intensive focus on strategies that can accelerate their identification and optimization. We and others have previously used chemical proteomics to map degradable target space, and these datasets have been used to develop and train multiparameter models to extend degradability predictions across the proteome.

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Article Synopsis
  • Scientists are studying special molecules called bifunctional degraders that can help make drugs more effective by breaking down specific proteins in the body.
  • They created a new way to analyze how these molecules work and discovered that how long these molecules stay attached to the target protein is really important for how well they work.
  • By using clever chemistry techniques, researchers can quickly improve these molecules to help find new drugs faster.
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B-cell maturation antigen (BCMA) has emerged as a promising tumor marker for the diagnosis and treatment of multiple myeloma. The noninvasive and rapid detection of BCMA expression in vivo provides significant value in screening and evaluating multiple myeloma patients receiving BCMA-targeted therapy. We identified the BCMA-targeting peptide BP1 from a one-bead-one-compound (OBOC) peptide library using a high-throughput microarray strategy.

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Increasing studies focus on depolymerization of chondroitin sulfate (CS) to enhance its biological activities. In the present study, low-molecular-weight chondroitin sulfate (LMWCS)‑iron complexes were obtained by photocatalysis-Fenton reaction. After degradation with the optimal condition of 0.

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  • Many marine green algae, particularly those in the genus Caulerpa, are being explored as green caviar due to their appealing taste and nutritional benefits.
  • A new water-soluble sulfated xylogalactomannan (CO-0-1) was extracted from Caulerpa okamurae, characterized by its unique sugar composition and molecular structure.
  • CO-0-1 exhibited anticoagulant properties, suggesting potential health applications and enhancing the value of Caulerpa okamurae in various industries.
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Recent studies have highlighted the potential of Saccharina japonica Polysaccharides (SJPs) in alleviating high-fat diet (HFD)-induced obesity by regulating gut microbiota, which warrants further exploration to elucidate the underlying structure-activity relationship. In this study, five polysaccharide fractions (Sj-T, Sj-T-1, Sj-T-2, Sj-T-3, and Sj-T-4) with different structure characteristics were prepared from S. japonica, and their effects on HFD-induced obesity and gut microbiota composition were investigated using C57BL/6J mice.

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Article Synopsis
  • Green tea polyphenols (GTP) help improve lipid metabolism and gut health by influencing interactions between gut bacteriophages and bacteria.
  • GTP consumption in high-fat diet-fed ob/ob mice resulted in reduced body weight and levels of triglycerides, insulin, and inflammation markers, while improving beneficial metabolites.
  • The study suggests that GTP not only aids in reducing fat accumulation and inflammation but also enhances gut barrier function, linked to changes in the gut's bacteriophage community.
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  • Candida albicans biofilms present treatment challenges, particularly with fluconazole (FLC) resistance, prompting the investigation of the antimicrobial agent berberine (BBR) as a potential enhancer of FLC sensitivity.
  • A comparative study demonstrated that the combination of FLC and BBR significantly inhibits the growth and biofilm formation of FLC-resistant strains by downregulating key genes associated with drug resistance and virulence, while also reducing cell surface hydrophobicity.
  • Genome-wide sequencing revealed that metabolic pathways related to amino acid and carbon metabolism, as well as ergosterol biosynthesis, are involved in resistance mechanisms, with the combination treatment affecting the expression of several ergosterol-related genes.
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Actinomycetes have long been recognized as important sources of clinical antibiotics. However, the exploration of rare actinomycetes, despite their potential for producing bioactive molecules, has remained relatively limited compared to the extensively studied genus. The extensive investigation of species and their natural products has led to a diminished probability of discovering novel bioactive compounds from this group.

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Vascular endothelial growth factor (VEGF) targeted therapy serves as an important therapeutic approach for renal cancer, but its clinical effectiveness is unsatisfactory. Moreover, there is a lack of reliable biomarkers for preoperative assessment of tumor VEGF expression. This study aimed to explore the potential for further applications of Lu/Zr-labeled aflibercept (Abe), a VEGF-binding agent, in imaging visualization of VEGF expression and therapy for renal cancer.

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Background: Corneal neovascularization (CoNV) threatens vision by disrupting corneal avascularity, however, current treatments, including pharmacotherapy and surgery, are hindered by limitations in efficacy and adverse effects. Minocycline, known for its anti-inflammatory properties, could suppress CoNV but faces challenges in effective delivery due to the cornea's unique structure. Therefore, in this study a novel drug delivery system using minocycline-loaded nano-hydroxyapatite/poly (lactic-co-glycolic acid) (nHAP/PLGA) nanoparticles was developed to improve treatment outcomes for CoNV.

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Chemical investigation of sp. NBUF088, associated with an sp. sponge located at an 84 m deep mesophotic zone, led to the discovery of two new heptaketides, named irpetones A () and B ().

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One novel rearranged pimarane diterpenoid, pestanoid A (), and two reported molecules, nodulisporenones A () and B (), were discovered from sp. NBUF145 fungus associated with a 62 m deep mesophotic ("twilight") zone Chalinidae sponge. The structures of - were identified by spectrometry, spectroscopy, quantum-chemical calculations, and X-ray crystallography.

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Site-specific covalent conjugation offers a powerful tool to identify and understand protein-protein interactions. In this study, we discover that sulfur fluoride exchange (SuFEx) warheads effectively crosslink the acyl carrier protein (AcpP) with its partner BioF, a key pyridoxal 5'-phosphate (PLP)-dependent enzyme in the early steps of biotin biosynthesis by targeting a tyrosine residue proximal to the active site. We identify the site of crosslink by MS/MS analysis of the peptide originating from both partners.

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Skeletal disorders are commonly diagnosed by X-ray imaging, but the radiation limits its use. Optical imaging through the near-infrared-II window (NIR-II, 1000-1700 nm) can penetrate deep tissues without radiation risk, but the targeting of contrast agent is non-specific. Here, we report that lanthanide-doped nanocrystals can passively target the bone marrow, which can be effective for over two months.

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Silibinin, also known as silybin, is isolated from milk thistle (). Silibinin has been demonstrated to be a good lead compound due to its potential to prevent and treat prostate cancer. Its moderate potency and poor pharmacokinetic profile hindered it from moving forward to therapeutic use.

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Gastrointestinal stromal tumors (GISTs) are the most common mesenchymal neoplasm arising from gastrointestinal tract and can be benign or malignant. Rectal GISTs are rare and have poor prognosis. We here reported an older male who presented with features of distending discomfort in the rectum and pain in the anus due to a large rectal tumor.

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The process of transcatheter arterial chemoembolization is characterized by the ability to accurately deliver chemotherapy drugs with minimal systemic side effects and has become the standard treatment for unresectable intermediate hepatocellular carcinoma (HCC). However, this treatment option still has much room for improvement, one of which may be the introduction of nanomaterials, which exhibit unique functions and can be applied to in vivo tumor imaging and therapy. Several biodegradable and multifunctional nanomaterials and nanobeads have recently been developed and applied in the locoregional treatment of hepatocellular cancer.

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Lung adenocarcinoma is the most common histologic type of lung cancer. The pixel-level labeling of histologic patterns of lung adenocarcinoma can assist pathologists in determining tumor grading with more details than normal classification. We manually annotated a dataset containing a total of 1000 patches (200 patches for each pattern) of 512 × 512 pixels and 420 patches (contains test sets) of 1024 × 1024 pixels according to the morphological features of the five histologic patterns of lung adenocarcinoma (lepidic, acinar, papillary, micropapillary, and solid).

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Malignant melanoma (MM) is an aggressive malignant tumor, which mostly occurs on the skin, uvea, etc. The mucosal MM accounts for a small proportion of all MM and can occur in the digestive tract. Primary MM of the digestive tract is rare and can be found in the middle and lower third of the esophagus and the rectum containing melanocytes.

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