Publications by authors named "Siomar Soares"

Weissella, a genus of lactic acid bacteria, has diverse beneficial attributes including probiotic activity and biotechnological applications. Therefore, the investigation of the Weissella genus has garnered growing interest. In this study, we sequenced the complete genome of Weissella paramesenteroides UFTM 2.

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Background: Campylobacter spp. have been reported as a common cause of gastroenteritis in humans in many countries. However, in Brazil there is insufficient data to estimate the impact of Campylobacter in public health.

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Introduction: Serratia marcescens is an opportunistic pathogen found ubiquitously in the environment and associated with a wide range of nosocomial infections. This multidrug-resistant bacterium has been a cause of concern for hospitals and healthcare facilities due to its ability to spread rapidly and cause outbreaks. Next generation sequencing genotyping of bacterial isolates has proven to be a valuable tool for tracking the spread and transmission of nosocomial infections.

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Background: serovar Infantis ( Infantis) is a zoonotic, ubiquitous and foodborne pathogen of worldwide distribution. Despite Brazil's relevance as a major meat exporter, few studies were conducted to characterize strains of this serovar by genomic analyses in this country. Therefore, this study aimed to assess the diversity of 80 Infantis strains isolated from veterinary, food and human sources in Brazil between 2013 and 2018 by comparative genomic analyses.

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Histoplasmosis is a widespread systemic disease caused by , prevalent in the Americas. Despite its significant morbidity and mortality rates, no vaccines are currently available. Previously, five vaccine targets and specific epitopes for were identified.

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Equine strangles is a prevalent disease that affects the upper respiratory in horses and is caused by the Gram-positive bacterium . In addition to strangles, other clinical conditions are caused by the two subspecies, and , which present relevant zoonotic potential. Treatment of infections caused by has become challenging due to the worldwide spreading of infected horses and the unavailability of effective therapeutics and vaccines.

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Vibriosis and cholera are serious diseases distributed worldwide and caused by six marine bacteria of the genus. Thousands of deaths occur each year due to these illnesses, necessitating the development of new preventive measures. Presently, the existing cholera vaccine demonstrates an effectiveness of approximately 60%.

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Sexually Transmitted Infections (STIs) are a public health burden rising in developed and developing nations. The World Health Organization estimates nearly 374 million new cases of curable STIs yearly. Global efforts to control their spread have been insufficient in fulfilling their objective.

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Listeria monocytogenes is an important human and animal pathogen able to cause an infection named listeriosis and is mainly transmitted through contaminated food. Among its virulence traits, the ability to form biofilms and to survive in harsh environments stand out and lead to the persistence of L. monocytogenes for long periods in food processing environments.

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Article Synopsis
  • A study was conducted on a Gram-negative bacterial species known to affect both fish and humans, focusing on newly sequenced isolates from the São Francisco Valley in Brazil.
  • The researchers compared these isolates with complete genomes in public databases to assess their taxonomy, virulence, and antibiotic resistance profiles.
  • They identified 239 virulence genes and 60 resistance genes, highlighting significant similarities with NCBI genomes, and emphasized the need for accurate genomic classification and monitoring of antibiotic resistance, particularly for colistin.
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Biofilms are complex microecosystems with valuable ecological roles that can shelter a variety of microorganisms. Spirochetes from the genus Leptospira have been observed to form biofilms in vitro, in rural environments, and in the kidneys of reservoir rats. The genus Leptospira is composed of pathogenic and non-pathogenic species, and the description of new species is ongoing due to the advent of whole genome sequencing.

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  • This study focuses on the RSSC species complex, which causes serious plant diseases (like bacterial wilt and Moko disease) in important crops, especially in tropical regions like Brazil.
  • Researchers sequenced 14 new isolates from Brazil, finding distinct phylotypes that indicate genetic similarities and differences among strains responsible for these diseases.
  • The analysis revealed that while many Rips (key molecular factors for pathogenicity) were shared among the isolates, unique Rips may contribute to individual virulence, necessitating further research on how these Rips affect interactions with different host plants.
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is a nonlipophilic coryneform which is increasingly being recognized as a relevant human and animal pathogen showing multidrug resistance to commonly used antibiotics. However, little is known about the molecular mechanisms involved in transition from colonization to the MDR invasive phenotype in clinical isolates. In this study, we performed a comprehensive pan-genomic analysis of , including 26 isolates from different countries.

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Article Synopsis
  • Probiotics are microorganisms that promote health, especially by modulating immune responses and reducing inflammation.
  • This study focused on nine strains of a specific probiotic bacteria, analyzing their genetic makeup to identify genes that contribute to their health benefits for humans.
  • Key findings included shared genes linked to stress response, adhesion to human proteins, and the production of beneficial compounds, highlighting the potential of these strains to support gut health and overall wellness.
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The genus comprises an important group of ubiquitous bacteria of marine systems with a high infectious capacity for humans and fish, which can lead to death or cause economic losses in aquaculture. However, little is known about the evolutionary process that led to the adaptation and colonization of humans and also about the consequences of the uncontrollable use of antibiotics in aquaculture. Here, comparative genomics analysis and functional gene annotation showed that the species more related to humans presented a significantly higher amount of proteins associated with colonization processes, such as transcriptional factors, signal transduction mechanisms, and iron uptake.

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  • Leprosy is caused by special bacteria and can take a long time to show symptoms, making early diagnosis really important but hard to do.
  • Scientists are working on a new way to detect leprosy by creating a special protein that helps find the disease early by spotting specific antibodies.
  • They selected 22 proteins, found important parts (called epitopes), and created a new protein that is safe and could help doctors diagnose leprosy more effectively.
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Background: Domestic pigeons carry pathogens in their droppings, posing a potential public health problem.

Methods: The phenotypic and genotypic antimicrobial resistances of Staphylococcus aureus and Enterococcus faecium in the feces of urban pigeons near hospitals with intensive care units were measured.

Results: Twenty-nine samples showed Enterococcus growth, whereas one was positive for S.

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Syphilis, a sexually transmitted infection caused by the spirochete , has seen a resurgence over the past years. is capable of early dissemination and immune evasion, and the disease continues to be a global healthcare burden. The purpose of this study was to design a multi-epitope immunogen through an immunoinformatics-based approach.

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Pneumonia is a serious global health problem that accounts for over one million deaths annually. Among the main microorganisms causing pneumonia, Mycoplasma pneumoniae is one of the most common ones for which a vaccine is immediately required. In this context, a multi-epitope vaccine against this pathogen could be the best option that can induce effective immune response avoiding any serious adverse reactions.

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is a potential vector of (Tc), the causative agent of Chagas disease. The salivary glands (SGs) and intestine (INT) are actively required during blood feeding. The saliva from SGs is injected into the vertebrate host, modulating immune responses and favoring feeding for INT digestion.

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Article Synopsis
  • Pseudomonas sp. strain LAP_36 was isolated from the rhizosphere soil of the plant Deschampsia antarctica, found on King George Island in Antarctica.
  • The draft genome sequence of this strain is approximately 8.8 million base pairs long, with a GC content of 60.0%.
  • It contains a total of 8,011 protein-coding genes, which are essential for understanding its biological functions.
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Periodontal disease is an infectious inflammatory disease related to the destruction of supporting tissues of the teeth, leading to a functional loss of the teeth. Inflammatory molecules present in the exudate are catalyzed and form different metabolites that can be identified and quantified. Thus, we evaluated the inflammatory exudate present in crevicular fluid to identify metabolic biological markers for diagnosing chronic periodontal disease in older adults.

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Recently, two cases of complete remission of classical Hodgkin lymphoma (cHL) and follicular lymphoma (FL) after SARS-CoV-2 infection were reported. However, the precise molecular mechanism of this rare event is yet to be understood. Here, we hypothesize a potential anti-tumor immune response of SARS-CoV-2 and based on a computational approach show that: (i) SARS-CoV-2 Spike-RBD may bind to the extracellular domains of CD15, CD27, CD45, and CD152 receptors of cHL or FL and may directly inhibit cell proliferation.

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The Gram-negative bacillus a member of family, is an opportunistic nosocomial pathogen commonly found in hospital outbreaks that can cause infections in the urinary tract, bloodstream, central nervous system and pneumonia. Because strains are resistant to several antibiotics, it is critical the need for effective treatments, including new drugs and vaccines. Here, we applied reverse vaccinology and subtractive genomic approaches for the prediction of potential vaccine and drug targets against 59 strains of .

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Pertussis is a highly contagious respiratory disease caused by a Gram-negative bacterium described over a century ago. Despite broad vaccine coverage and treatment options, the disease is remerging as a public health problem especially in infants and older children. Recent data indicate re-emergence of the disease is related to bacterial resistance to immune defences and decreased vaccine effectiveness, which obviously suggests the need of new effective vaccines and drugs.

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