Publications by authors named "Shuvom Sadhuka"

Article Synopsis
  • The rapid increase in biomedical data raises significant privacy issues, leading to the creation of data silos due to inadequate protection in traditional frameworks.
  • Privacy-enhancing technologies (PETs) offer solutions to safeguard sensitive data while allowing for analysis and sharing, thereby promoting broader usage in the field.
  • The review covers key applications of PETs, recent advancements, and highlights challenges and social factors that need to be addressed for wider acceptance in biomedical data science.
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Gene expression data provide molecular insights into the functional impact of genetic variation, for example, through expression quantitative trait loci (eQTLs). With an improving understanding of the association between genotypes and gene expression comes a greater concern that gene expression profiles could be matched to genotype profiles of the same individuals in another data set, known as a linking attack. Prior works show such a risk could analyze only a fraction of eQTLs that is independent owing to restrictive model assumptions, leaving the full extent of this risk incompletely understood.

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Topological metamaterials have robust properties engineered from their macroscopic arrangement, rather than their microscopic constituency. They can be designed by starting from Dirac metamaterials with either symmetry-enforced or accidental degeneracy. The latter case provides greater flexibility in the design of topological switches, waveguides, and cloaking devices, because a large number of tuning parameters can be used to break the degeneracy and induce a topological phase.

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Article Synopsis
  • Most variants found through Genome-Wide Association Studies (GWAS) are non-coding, prompting the need to study their regulatory functions more closely.
  • Traditional experimental methods to explore the impact of these variants on gene expression are limited in scale, lacking comprehensive high-throughput approaches.
  • The study introduces the expression modifier score (EMS) that utilizes a large dataset of causal variants to enhance predictions of how variants affect gene expression, leading to the identification of thousands of additional candidate regulatory variants and genes.
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