Publications by authors named "Shun Tan"

Background And Aim: Postbiotics are functional bioactive compounds or bioactive molecules with beneficial effects on health and functional activities in humans or livestock, produced by probiotic bacteria or yeast. Several postbiotics, including enzymes, short-chain fatty acids, amino acids, extracellular polysaccharides, microbial cell fragments, and teichoic acids, are currently being widely studied. This study aimed to explore the potential of secondary metabolites of and as lactic acid bacteria (LAB) and yeast isolated from Budu (fermented fish) which can act as postbiotics through rumen fermentation.

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  • Four new halophilic archaeal strains (YCN1, YCN58, LT38, LT62) were discovered in China’s Yuncheng Salt Lake and Tarim Basin.
  • Phylogenetic analysis showed that these strains are closely related to existing species in the Halobacterium, Natronomonas, Halorientalis, and Halobellus genera, but they meet the criteria for being classified as new species due to distinct characteristics.
  • The newly proposed species are named Halobacterium yunchengense, Natronomonas amylolytica, Halorientalis halophila, and Halobellus salinisoli based on their genetic and phenotypic differences.
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  • * Cutoff values for distinguishing genera in this family were proposed, including AAI (72.1%), ANI (82.2%), and rpoB' gene similarity (90.7%).
  • * Five newly isolated halophilic archaeal strains led to the identification of five new species in the genus Halobaculum, which were named Halobaculum lipolyticum, Halobaculum marinum, Halobaculum litoreum, Halobaculum halobium, and Halobaculum limi
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  • The genera Halosegnis and Salella are closely related, with high gene similarity indicating they should be merged into one genus, with Salella cibi as a synonym of Halosegnis longus.
  • Phylogenetic analyses showed that Salella cibi forms a tight cluster with Halosegnis longus, suggesting significant genetic overlap.
  • New species of halophilic archaea were identified from China's saline soil, leading to the proposal of four novel species: Halorussus caseinilyticus, Halorussus lipolyticus, Halosegnis marinus, and Haloglomus litoreum.
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Bacteriocins produced by have gained recognition for their safe use in humans. In this study, we aimed to assess the inhibitory activity of an antimicrobial peptide synthesized by the wild-type strain of against the notorious pathogen . Our investigation employed the broth microdilution method to evaluate the inhibitory potential of this peptide.

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  • The genera Haloarcula and Halomicroarcula are closely related within the Haloarculaceae family, showing significant genetic similarities above genus boundaries, suggesting they should be merged.
  • Phylogenomic analysis indicates that Haloarcula and Halomicroarcula form a distinct cluster, differentiated from Halomicrobium, based on various genetic metrics like 16S rRNA and rpoB' gene similarities.
  • Six new species of Haloarcula are described, isolated from salt environments in China, each displaying unique phenotypic traits despite their genetic closeness to existing Haloarcula and Halomicroarcula species.
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  • Two new halophilic archaeal strains, GSLN9 and XZYJT29, were discovered in saline soil from western China, showing significant genetic differences from known species.
  • Genetic analysis revealed their close relations to specific genera, with GSLN9 and XZYJT29 displaying distinct average nucleotide identity and amino acid values compared to their relatives, indicating they do not belong to previously identified species.
  • Phenotypic characterizations and polar lipid compositions further confirmed that GSLN9 and XZYJT29 are unique, leading to the proposal of them as new species, designated as sp. nov. for their respective genera.
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  • Two new strains of halophilic archaea, XZGYJ-43 and ZJ1, were isolated from solar salterns in Tibet and Guangdong, China, respectively.
  • Genetic analysis showed that XZGYJ-43 is quite distinct from related strains, whereas ZJ1 closely clusters with its existing genus.
  • Both strains display unique phenotypic traits and lipid compositions, leading to the proposal of XZGYJ-43 as a new species in a new genus and ZJ1 as a new species in its current genus.
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Interferon-gamma (IFN-γ) signaling is necessary for the proinflammatory activation of macrophages but IFN-γ-independent pathways, for which the initiating stimuli and downstream mechanisms are lesser known, also contribute. Here we identify, by high-content screening, SEPTIN2 (SEPT2) as a negative regulation of IFN-γ-independent macrophage autoactivation. Mechanistically, endoplasmic reticulum (ER) stress induces the expression of SEPT2, which balances the competition between acetylation and ubiquitination of heat shock protein 5 at position Lysine 327, thereby alleviating ER stress and constraining M1-like polarization and proinflammatory cytokine release.

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Two halophilic archaeal strains, ZS-10 and GSL13, were isolated from the Zhoushan marine saltern in Zhejiang, and an inland saline soil from the Tarim Basin, Xinjiang, PR China, respectively. The cells of strain ZS-10 were pleomorphic while those of strain GSL13 were rod-shaped. Both of them stained Gram-negative and formed red-pigmented colonies on agar plates and their cells lysed in distilled water.

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  • Five new halophilic archaeal strains were discovered in salt lakes in China, showing low genetic similarities (91.3-96.0%) to existing species and likely representing a new genus.
  • Phylogenetic analysis confirmed these strains form a separate clade, with genetic metrics indicating they don't fit within current species levels, reinforcing their classification as a new genus.
  • The strains exhibit distinct phenotypic traits and contain specific lipids, leading to their identification as five novel species within this proposed new genus.
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  • Four halophilic archaea strains (AD-4, CGA30, CGA73, WLHSJ27) were discovered in salt and soda lakes in China, showing 90.9-97.5% gene sequence similarity to existing members of the Natrialbaceae family.
  • Phylogenetic analyses indicated that strains AD-4, CGA73, and WLHSJ27 are likely new genera within Natrialbaceae, while CGA30 is a novel species of Halovivax.
  • The strains display distinctive phenotypic traits and unique glycolipid profiles, with common major phospholipids and respiratory quinones, supporting their classification as three new genera and one new species.
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Four extremely halophilic archaeal strains, LYG-108, LYG-24, DT1 and YSSS71, were isolated from salted produced in Lianyungang and saline soil from the coastal beach at Jiangsu, PR China. The four strains were found to be related to the current species of (showing 88.1-98.

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Four extremely halophilic archaeal strains (ZJ2, BND6, DT87, and YPL30) were isolated from marine environments and a salt mine in China. The 16S rRNA and rpoB' gene sequence similarities among strains ZJ2, BND6, DT87, YPL30 and the current species of Natrinema were 93.2-99.

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Two extremely halophilic archaeal strains, PSR5 and PSR8, were isolated from a saline soil sample collected from the Tarim Basin, Xinjiang, PR China. Both strains had two copies of the 16S rRNA genes and , showing 2.6 and 3.

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Mining minerals plays a fundamental role in promoting social-economic progress. Intensive mining operations. However, it also brings huge ecological risks, and may lead to significant changes in land use/land cover (LULC), further affecting the urban landscape and ecological environment.

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A symbiotic microalgal-bacterial system may be an optional technology for wastewater treatment. It was composed of microalgae and activated sludge and established in the SBR to explore the effect of different dosing ratios of algae and sludge on the removal of nitrogen and phosphorus from simulated wastewater containing ammonium. It can be seen from the result that varied algae-sludge dosing ratios had a higher removal effect on COD removal, but the difference was not significant.

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The dynamics of quasispecies afford RNA viruses a great fitness on cell tropism and host range. To study the quasispecies features and the intra-host evolution of SARS-CoV-2, we collected nine confirmed patients and sequenced the haplotypes of spike gene using a single-molecule real-time platform. Fourteen samples were extracted from sputum, nasopharyngeal swabs, or stool, which in total produced 283,655 high-quality circular consensus sequences.

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Tuberculosis (TB) is an infectious disease caused by Mycobacterium tuberculosis (Mtb) that places a heavy strain on public health. Host susceptibility to Mtb is modulated by macrophages, which regulate the balance between cell apoptosis and necrosis. However, the role of molecular switches that modulate apoptosis and necrosis during Mtb infection remains unclear.

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While prospective recording is considered as the gold standard, retrospective recall is widely utilized for falls outcomes due to its convenience. This brings about the concern on the validity of falls reporting in Southeast Asian countries, as the reliability of falls recall has not previously been studied. This study aimed to evaluate the reliability of retrospective falls recall compared to prospective falls recording.

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In patients coinfected with SARS-CoV-2 and HBV, liver injury was common. However, the interactions between SARS-CoV-2 and HBV coinfection remained unknown. Sixty-seven COVID-19 patients from the previous cohort were enrolled and classified into 2 groups (7 with HBsAg+ and 60 with HBsAg-).

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The Wingless-type protein 7a (Wnt7a) plays an antiproliferative role in non-small-cell lung cancer (NSCLC). Previous studies have indicated that Wnt7a expression was downregulated in radiation-resistant NSCLC cells. However, little is known about its biological functions and molecular mechanisms in radiosensitivity of NSCLC.

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