Publications by authors named "Shumai Ye"

The cAMP receptor proteins (CRPs) play a critical role in bacterial environmental adaptation by regulating global gene expression levels via cAMP binding. Here, we report the structure of DdrI, a CRP family protein from . Combined with biochemical, kinetic, and molecular dynamics simulations analyses, our results indicate that DdrI adopts a DNA-binding conformation in the absence of cAMP and can form stable complexes with the target DNA sequence of classical CRPs.

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Background: Histone-like proteins are small molecular weight DNA-binding proteins that are widely distributed in prokaryotes. These proteins have multiple functions in cellular structures and processes, including the morphological stability of the nucleoid, DNA compactness, DNA replication, and DNA repair. Deinococcus radiodurans, an extremophilic microorganism, has extraordinary DNA repair capability and encodes an essential histone-like protein, DrHU.

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Synopsis of recent research by authors named "Shumai Ye"

  • - Shumai Ye's recent research focuses on the biochemical properties and structural dynamics of CRP family proteins, revealing insights into their DNA-binding capabilities in the absence of cAMP in his study of DdrI.
  • - His work also examines the role of histone-like proteins, specifically DrHU from Deinococcus radiodurans, highlighting their multifaceted functions in DNA compaction, stability, and repair under extreme conditions.
  • - Through the integration of structural analysis, biochemical methods, and molecular simulations, Ye's findings contribute to a deeper understanding of bacterial adaptation mechanisms and functional roles of DNA-binding proteins.