Diverse microbiome functions, limited temporal variation and substantial genomic conservation within sedimentary and granite rock deep underground research laboratories.

Background: Underground research laboratories (URLs) provide a window on the deep biosphere and enable investigation of potential microbial impacts on nuclear waste, CO and H stored in the subsurface. We carried out the first multi-year study of groundwater microbiomes sampled from defined intervals between 140 and 400 m below the surface of the Horonobe and Mizunami URLs, Japan.

Results: We reconstructed draft genomes for > 90% of all organisms detected over a four year period.

Convergent evolution of viral-like Borg archaeal extrachromosomal elements and giant eukaryotic viruses.

Unlabelled: Borgs are huge extrachromosomal elements of anaerobic methane-oxidizing archaea. They exist in exceedingly complex microbiomes, lack cultivated hosts and have few protein functional annotations, precluding their classification as plasmids, viruses or other. Here, we used structure prediction methods to investigate potential roles for ∼10,000 Borg proteins.

Vitamin interdependencies predicted by metagenomics-informed network analyses and validated in microbial community microcosms.

Metagenomic or metabarcoding data are often used to predict microbial interactions in complex communities, but these predictions are rarely explored experimentally. Here, we use an organism abundance correlation network to investigate factors that control community organization in mine tailings-derived laboratory microbial consortia grown under dozens of conditions. The network is overlaid with metagenomic information about functional capacities to generate testable hypotheses.

Closely related Lak megaphages replicate in the microbiomes of diverse animals.

Lak phages with alternatively coded ∼540 kbp genomes were recently reported to replicate in in microbiomes of humans that consume a non-Western diet, baboons, and pigs. Here, we explore Lak phage diversity and broader distribution using diagnostic polymerase chain reaction and genome-resolved metagenomics. Lak phages were detected in 13 animal types, including reptiles, and are particularly prevalent in pigs.

Diverse ATPase Proteins in Mobilomes Constitute a Large Potential Sink for Prokaryotic Host ATP.

Prokaryote mobilome genomes rely on host machineries for survival and replication. Given that mobile genetic elements (MGEs) derive their energy from host cells, we investigated the diversity of ATP-utilizing proteins in MGE genomes to determine whether they might be associated with proteins that could suppress related host proteins that consume energy. A comprehensive search of 353 huge phage genomes revealed that up to 9% of the proteins have ATPase domains.

Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale.

Background: Biogeochemical exports from watersheds are modulated by the activity of microorganisms that function over micron scales. Here, we tested the hypothesis that meander-bound regions share a core microbiome and exhibit patterns of metabolic potential that broadly predict biogeochemical processes in floodplain soils along a river corridor.

Results: We intensively sampled the microbiomes of floodplain soils located in the upper, middle, and lower reaches of the East River, Colorado.

Excellent Electrolyte Wettability and High Energy Density of BS as a Two-Dimensional Dirac Anode for Non-Lithium-Ion Batteries.

Two-dimensional (2D) Dirac materials with ultrahigh electronic conductivity exhibit great promise for application as an anode material in non-lithium-ion batteries (NLIBs) with a reduced conductive additive and a binder as a nonactive material additive. Graphene is one of the most prominent 2D Dirac materials with high electrolyte wettability; however, it cannot be used as an anode material in NLIBs owing to its poor affinity toward metal ions such as Na, K, Ca, Mg, and Al. In this work, we investigated the use of recently developed boron sulfide (BS) as a new lightweight 2D Dirac anode for NLIBs on the basis of first-principles calculations.

Characterizing the Networks of Digital Information that Support Collaborative Adaptive Forest Management in Sierra Nevada Forests.

Some of the factors that can contribute to the success of collaborative adaptive management--such as social learning, open communication, and trust--are built upon a foundation of the open exchange of information about science and management between participants and the public. Despite the importance of information transparency, the use and flow of information in collaborative adaptive management has not been characterized in detail in the literature, and currently there exist opportunities to develop strategies for increasing the exchange of information, as well as to track information flow in such contexts. As digital information channels and networks have been increased over the last decade, powerful new information monitoring tools have also been evolved allowing for the complete characterization of information products through their production, transport, use, and monitoring.

Expanding the table: the web as a tool for participatory adaptive management in California forests.

Participatory adaptive management is widely promoted as the new paradigm in public lands management. It is grounded in two underlying principles - that management experiments and diverse sources of information should be used to continually refine management in complex ecological systems, and that the public must be included throughout the adaptive management process. Access to scientific results and exchange of information is at the core of both of these principles.

[Magnetic resonance myocardial perfusion imaging for evaluating myocardial viability after myocardial infarction].

Objective: To assess the value of magnetic resonance (MR) myocardial perfusion imaging (MRMPI) in evaluating the myocardial viability in patients with myocardial infarction.

Methods: MRMPI was performed in 51 patients with myocardial infarction using a 1.5 T MR scanner.