Publications by authors named "Shu-Yi Si"

Article Synopsis
  • Three chromomycin derivatives were identified from soil bacteria, specifically chromomycins A and monodeacetylchromomycin A, with their structures and absolute configurations analyzed using advanced techniques like NMR.
  • These compounds demonstrated strong cytotoxic effects against various non-small-cell lung cancer (NSCLC) cells and were found to lower the protein levels of c-FLIP in one of the cancer cell lines.
  • In animal studies, the chromomycins were more effective at inhibiting tumor growth in specific conditions, indicating that c-FLIP plays a significant role in the anticancer activity of these compounds.
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  • - PCSK9 is a protein that binds to LDLR in the liver and causes its degradation, leading to higher cholesterol levels; targeting PCSK9 can help manage cholesterol levels and reduce conditions like hypercholesterolemia and atherosclerosis.
  • - A new compound called E28362 was identified as a potential PCSK9 inhibitor through virtual screening, showing promise in increasing LDLR levels and reducing LDL cholesterol in lab tests and animal models.
  • - In studies with hamsters and mice on high-fat diets, E28362 effectively lowered cholesterol and triglyceride levels and decreased atherosclerotic lesions, indicating its potential as a treatment for cholesterol-related diseases.
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  • Five isocoumarin derivatives were isolated from the culture extract of CPCC 400810, including three new compounds named aspermarolides A-C.
  • The structures of the compounds were analyzed using spectroscopic techniques, with specific focus on determining double bond geometry and absolute configuration.
  • None of the compounds demonstrated cytotoxic effects against the HepG2 and HeLa human cancer cell lines tested.
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In this paper, we present the discovery of a novel salicylic acid derivative, moldavica acid A (), and a new natural dibenzo[b,f]oxepin, moldavica acid B (), together with four known phenylpropionic acids (-) and protocatechuic acid () that were isolated from L. Their structures were elucidated by comprehensive spectroscopic methods, including infrared and nuclear magnetic resonance. Compound is the first example of salicylic acid linking a carboxylated -pyrone via an ethyl bridge.

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  • - IMB5476 is a newly identified nitrobenzoate microtubule inhibitor that shows better water solubility compared to its precursor, IMB5046.
  • - It disrupts microtubule networks and halts the cell cycle at the G2/M phase, leading to cell death through mechanisms like mitotic catastrophe and apoptosis.
  • - IMB5476 is effective against drug-resistant tumor cells, inhibits angiogenesis, and shows anti-tumor activity in mouse models, suggesting its potential as a treatment option that overcomes multidrug resistance.
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  • A new cytochalasin dimer named verruculoid A and three novel derivatives were isolated from a deep-sea fungus collected from the South China Sea.
  • Verruculoid A is unique as it's the first of its kind to have a thioether bridge, and the 12-nor-cytochalasin F derivative is the first of its class.
  • These compounds showed promising antibacterial and cytotoxic properties, with one exhibiting activity against a human pathogen and others demonstrating cytotoxic effects on tumor cell lines.
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  • Researchers isolated and identified a new compound called fusapyrone A from rice fermentation of a desert fungus (species CPCC 401218).
  • The structure of fusapyrone A was determined using various analytical techniques, including mass spectrometry and nuclear magnetic resonance (NMR).
  • The compound exhibited weak antiproliferative activity against Hela cells with an inhibitory concentration (IC) of 50.6 μM.
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Atherosclerosis is the pathological basis of most cardiovascular diseases. Reverse cholesterol transport (RCT) is a main mechanism of cholesterol homeostasis and involves the direct transport of high-density lipoprotein (HDL) cholesteryl ester by selective cholesterol uptake. Hepatic scavenger receptor class B member 1 (SR-BI) overexpression can effectively promote RCT and reduce atherosclerosis.

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Cathepsin K (Cat K) is a predominant cysteine protease and highly potent collagenase expressed in osteoclasts. Cat K inhibitors are anti-resorptive agents to treat osteoporosis. A novel scaffold of cathepsin K inhibitors, exemplified by lead compound 1x, was used as the template for designing and synthesizing a total of 61 derivatives that have not been reported before.

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Nineteen new quinoline derivatives were prepared via the Mannich reaction and evaluated for their antibacterial activities against both Gram-positive (G⁺) and Gram-negative (G) bacteria, taking compound as the lead. Among the target compounds, quinolone coupled hybrid exerted the potential effect against most of the tested G⁺ and G strains with MIC values of 0.125⁻8 μg/mL, much better than those of .

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Inhibition of excessive osteoclast differentiation and activity is a valid approach for the treatment of osteoporosis. T63 is a small-molecule compound identified from a high throughput screening based on RUNX2 transcriptional activity, and has been reported to stimulate osteoblast formation. However, whether the compound has any effect on osteoclast differentiation remains unknown.

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  • Two new linear peptides, Ahmpatinin Bu (1) and statinin Bu (2), along with a unique pyrrolidine derivative and three known pepstatin derivatives, were isolated from a specific strain of bacteria (CPCC 202950).
  • The structures of these compounds were determined using advanced techniques like Marfey's analysis and chiral-phase HPLC, and an unusual amino acid was identified in compound 1.
  • All isolated compounds, particularly Ahmpatinin Bu (1), showed potential as HIV-1 protease inhibitors, with compound 1 exhibiting significant activity with an IC value of 1.79 nM; a preliminary analysis of their structure-activity relationships was also discussed.
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Osteoporosis results from the imbalance between bone resorption and bone formation, and restoring the normal balance of bone remodeling is highly desirable for identification of better treatment. In this study, using a cell-based high-throughput screening model representing Runt-related transcription factor 2 (RUNX2) transcriptional activity, we identified a novel small-molecular-weight compound, T63, as an efficient up-regulator of osteogenesis. T63 increased the alkaline phosphatase (ALPL) activity and mineralization as well as gene expression of Alpl and other osteogenic marker genes in mouse osteoblasts and mesenchymal stem cell-like cells.

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Eight compounds were isolated from the rice fermentation of Streptomyces sp. CPCC 202950 by a combination of various chromatographic techniques including column chromatography over silica, Sephadex LH-20, flash C₁₈, and reversed-phase HPLC. Their structures were identified as 3-[(3'-amino-3'-oxoprop-1'-en-2'-yl)oxy]benzamide (1), m-hydroxybenzamide (2), leptosphaepin (3), 5-methyluracil (4), feruloylamide (5), p-hydroxyphenylacetoamide (6), vanillamide (7), cyclo (L-val-L-ala) (8).

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Objective: Berberine (BBR) clinically lowers blood lipid and glucose levels via multi-target mechanisms. One of the possible mechanisms is related to its effect on the short chain fatty acids (SCFAs) of the gut microbiota. The goal of this study is to investigate the therapeutic effect and mode of action of BBR working through SCFAs of the gut microbiota (especially, butyrate).

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With the method of fluorescence polarization (FP), we screened small molecule inhibitors for PLK1 PBD to identify the lead compounds for antitumor drugs. FP led to the identification of a potent hit, F083-0063, whose inhibition rate was (99.7 ± 0.

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Multidrug resistance is a major limitation for microtubule-binding agents in cancer treatment. Here we report a novel microtubule inhibitor (2-morpholin-4-yl-5-nitro-benzoic acid 4-methylsulfanyl-benzyl ester, IMB5046), its cytotoxicity against multidrug-resistant cell lines and its antitumor efficacy in animal models. IMB5046 disrupted microtubule structures in cells and inhibited purified tubulin polymerization in vitro.

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This study was designed to identify inducers of ATP-binding cassette transporter A1(ABCA1) and CD36 and lysosomal integral membrane protein-II analogous-1(CLA-1) and to evaluate the in vitro effect of the active compound on lipid metabolism. Among 20 000 compounds screened, E23869 was found as a positive hit using cell-based high throughput screening models. The up-regulating activities of E23869 in ABCA1p-LUC and CLA-1p-LUC Hep G2 cells were 196% and 198%, respectively.

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Bone morphogenetic protein 2(BMP2) plays a key role in bone development and reestablishment. In the study, we screened up-regulators of BMP2 among 20 000 compounds through a cell-based high throughput screening model and a positive compound E40071 [2-(4-(5-methyl-3-phenylpyrazolo[1,5-a]pyrimidin-7-yl) piperazin-1-yl)ethan-1-ol] was found as the positive hit. The EC(50) value of E40071 was 2.

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By using a cell-based high throughput screening model for the CLA-1 up-regulator, Streptomyces 203909 was found to produce up-regulator of CLA-1. A novel trichostatin analogue was isolated from the rice fermentation of Streptomyces sp. CPCC 203909by a combination of various chromatographic techniques including column chromatography (CC) over silica gel, flash C18 CC, and reversed-phase HPLC.

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Eleven compounds were isolated from the culture of Streptomyces sp. CPCC 202950 by a combination of various chromatographic techniques including column chromatography over macroporous resin HP-20, MCI, and reversed-phase HPLC. Their structures were identified as 1H-pyrrole-2-carboxamide(1),5'-deoxy-5'-methylthioinosine(2), vanillamide(3), trans-3-methylthioacrylamide(4), 1,2,3,4-Tetraydro-1H-pyrido[3,4-b]indole-3-carboxylic acid(5), cyclo(L-pro-L-tyr) (6), N-[2-(4-hydroxyphenyl)]ethylacetamide(7), benzamide (8), cyclo ('L-leucyl-trans-4-hydroxy-L-proline)(9), cyclo-(Phe-Gly) (10), and tryptophan (11).

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Article Synopsis
  • ABCA1 and SR-BI/CLA-1 are crucial proteins for reverse cholesterol transport, helping to reduce the risk of atherosclerosis.
  • The study aimed to identify compounds that can enhance the activity of these proteins, leading to E0869 being identified as a promising candidate after screening 20,000 compounds.
  • E0869 significantly increased the levels of ABCA1 and SR-BI/CLA-1 in specific cell models, showed anti-atherosclerotic effects by inhibiting lipid accumulation, and promoted cholesterol efflux.
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A new trichostatin analog (1) and two known analogs (2, 3) have been isolated from the rice fermentation of the Streptomyces sp. CPCC 203909. Their structures were determined by spectroscopic and chemical methods.

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  • Human APOBEC3G (hA3G) is a protein that restricts the replication of certain viruses, including hepatitis C virus (HCV), and understanding its mechanism could lead to new antiviral therapies.
  • This study found that hA3G directly binds to the C-terminus of the HCV non-structural protein NS3, inhibiting its helicase activity, which is crucial for HCV replication.
  • Interestingly, while hA3G levels initially increase in response to HCV infection, they diminish over time, indicating that HCV may have mechanisms to evade hA3G’s antiviral effects.
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  • * A hybrid virtual screening (VS) method was employed to identify novel inhibitors targeting two crucial enzymes, RmlB and RmlC, essential for the cell wall synthesis of Mycobacterium tuberculosis.
  • * The study developed pharmacophore models for these inhibitors and selected 20 promising compounds with favorable absorption and toxicity profiles, intended for further testing and structure-activity relationship studies.
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