LBF-MI: Limited Boolean Functions and Mutual Information to Infer a Gene Regulatory Network from Time-Series Gene Expression Data.

Background: In the realm of system biology, it is a challenging endeavor to infer a gene regulatory network from time-series gene expression data. Numerous Boolean network inference techniques have emerged for reconstructing a gene regulatory network from a time-series gene expression dataset. However, most of these techniques pose scalability concerns given their capability to consider only two to three regulatory genes over a specific target gene.

Optimized Crop Disease Identification in Bangladesh: A Deep Learning and SVM Hybrid Model for Rice, Potato, and Corn.

Agriculture plays a vital role in Bangladesh's economy. It is essential to ensure the proper growth and health of crops for the development of the agricultural sector. In the context of Bangladesh, crop diseases pose a significant threat to agricultural output and, consequently, food security.

A neuro-evolution approach to infer a Boolean network from time-series gene expressions.

Summary: In systems biology, it is challenging to accurately infer a regulatory network from time-series gene expression data, and a variety of methods have been proposed. Most of them were computationally inefficient in inferring very large networks, though, because of the increasing number of candidate regulatory genes. Although a recent approach called GABNI (genetic algorithm-based Boolean network inference) was presented to resolve this problem using a genetic algorithm, there is room for performance improvement because it employed a limited representation model of regulatory functions.

A Boolean network inference from time-series gene expression data using a genetic algorithm.

Motivation: Inferring a gene regulatory network from time-series gene expression data is a fundamental problem in systems biology, and many methods have been proposed. However, most of them were not efficient in inferring regulatory relations involved by a large number of genes because they limited the number of regulatory genes or computed an approximated reliability of multivariate relations. Therefore, an improved method is needed to efficiently search more generalized and scalable regulatory relations.

A novel mutual information-based Boolean network inference method from time-series gene expression data.

Background: Inferring a gene regulatory network from time-series gene expression data in systems biology is a challenging problem. Many methods have been suggested, most of which have a scalability limitation due to the combinatorial cost of searching a regulatory set of genes. In addition, they have focused on the accurate inference of a network structure only.