sp. nov. and sp. nov., novel ascomycetous yeast in the family Wickerhamiellaceae.

Seven yeast strains, DMKU VGT1-14, DMKU VGT1-19, DMKU-JMGT1-28, DMKU-JMGT1-32, DMKU VGT2-06, DMKU VGT2-19 and DMKU VGT6-14, were isolated from a grease trap in Thailand and two strains, SJ-1 and SN-102 were isolated from the sea surface microlayer in Taiwan. On the basis of phenotypic characteristics and sequence analysis of the D1/D2 region of the large subunit (LSU) rRNA gene and the internal transcribed spacer (ITS) region, these strains represented two novel yeast species of the genus . In terms of pairwise sequence similarity, four strains, DMKU VGT1-14, DMKU-JMGT1-32, DMKU VGT6-14 and SN-102, were closely related to NRRL Y-17858 but differed by 13 nucleotide substitutions with one gap (2.

Chemical Characteristics of Electron Shuttles Affect Extracellular Electron Transfer: NTOU1 Simultaneously Exploiting Acetate and Mediators.

In the present study, we found that our isolate NTOU1 is able to degrade acetate under anaerobic condition with concomitant implementation of extracellular electron transfer (EET). With +0.63 V (vs.

Cystobasidium keelungensis sp. nov., a novel mycosporine producing carotenogenic yeast isolated from the sea surface microlayer in Taiwan.

Cystobasidium keelungensis SN2 (CBS 6949 = BCRC 920080), a new anamorphic basidiomycetous yeast species, is described in this paper. The strains belonging to this species were isolated from the sea surface microlayer and underlying water in Taiwan. These strains were identified by examining nucleotide sequences in the species-specific D1/D2 domains of the large subunit (LSU) ribosomal RNA (rRNA) and by evaluating their physiological characteristics.

Using metabolic charge production in the tricarboxylic acid cycle (Q) to evaluate the extracellular-electron-transfer performances of Shewanella spp.

Using an electrochemical cell equipped with carbon felt electrodes (poised at +0.63 V vs. SHE), the current production capabilities of two Shewanella strains-NTOU1 and KR-12-were examined under various conditions with lactate as an electron donor.

Diversity of yeasts associated with the sea surface microlayer and underlying water along the northern coast of Taiwan.

Yeast communities inhabiting the sea surface microlayer (SSML) on the northern coast of Taiwan were examined using a cultivation method and compared with those inhabiting the underlying water (UW) at a 50-cm depth. Culturable yeasts were recovered from the SSML and UW samples collected in the morning during 4 field campaigns, and 420 strains were isolated. The 420 isolates were grouped into 43 species using a polyphasic molecular approach, including sequence analysis of the 26S rDNA D1/D2 domain and 5.

Identifying and characterizing Yarrowia keelungensis sp. nov., an oil-degrading yeast isolated from the sea surface microlayer.

Ascomycetous yeast strain SM-22 was isolated from the sea-surface microlayer near the Keelung City off the northern coast of Taiwan. This strain showed a cell surface hydrophobicity higher than 90 %, moderate UV A/B resistance, and it degraded 68 % of the total petroleum hydrocarbon content of an artificial seawater medium containing 1 % (v v(-1)) diesel oil within 15 days at 25 °C. The closest phylogenetic relative of this strain is Candida oslonensis CBS 10146(T), but it differs from strain SM-22 by a 3.

Biochemical characterization of two truncated forms of amylopullulanase from Thermoanaerobacterium saccharolyticum NTOU1 to identify its enzymatically active region.

The enzymatically active region of amylopullulanase from Thermoanaerobacterium saccharolyticum NTOU1 (TsaNTOU1Apu) was identified by truncation mutagenesis. Two truncated TsaNTOU1Apu enzymes, TsaNTOU1ApuM957 and TsaNTOU1ApuK885, were selected and characterized. Both TsaNTOU1ApuM957 and TsaNTOU1ApuK885 showed similar specific activities toward various substrates.

Ethanol production efficiency of an anaerobic hemicellulolytic thermophilic bacterium, strain NTOU1, isolated from a marine shallow hydrothermal vent in Taiwan.

A new extremely thermophilic, anaerobic, gram-negative bacterium, strain NTOU1, was enriched and isolated from acidic marine hydrothermal fluids off Gueishandao island in Taiwan with 0.5% starch and 0.5% maltose as carbon sources.

Monothiol glutaredoxin cDNA from Taiwanofungus camphorata: a novel CGFS-type glutaredoxin possessing glutathione reductase activity.

Glutaredoxins (Grxs) play important roles in the redox system via reduced glutathione as a reductant. A TcmonoGrx cDNA (1039 bp, EU158772) encoding a putative monothiol Grx was cloned from Taiwanofungus camphorata (formerly named Antrodia camphorata). The deduced amino acid sequence is conserved among the reported monothiol Grxs.

Characterization of a salt-tolerant xylanase from Thermoanaerobacterium saccharolyticum NTOU1.

A xylanase gene was PCR-cloned from Thermoanaerobacterium saccharolyticum and expressed in Escherichia coli. The xylanase (XynA) consisted of a signal peptide, glycoside hydrolase family 10 domains, carbohydrate-binding modules, and surface layer homology domains. It was optimally active at 70-73°C and at pH 5-7.

Identification of causative agents and species in shrimp implicated in a food poisoning case in Taiwan.

The possible causative agent and shrimp species involved in a bait shrimp poisoning case that occurred in northern Taiwan was determined. Because the patient's symptoms were similar to those caused by boric acid and slightly similar to those caused by sulfite, the concentrations of boric acid and sulfite (as sulfur dioxide) in the patient's vomitus and in shrimp collected from bait stores and markets were analyzed. The concentration of boric acid was 36.

Effect of coplanar PCB concentration on dechlorinating microbial communities and dechlorination in estuarine sediments.

The effect of concentration of coplanar PCB on the dechlorinating microbial community and dechlorination were investigated in anoxic estuarine sediment collected from Er-Jen River and enriched with 10 and 50 mg L⁻¹ of 3,4,4',5-tetrachlorobiphenyl, 3,3',4,4',5-pentachlorobiphenyl, and 3,3',4,4',5,5'-hexachlorobipheny. Dechlorination rates were similar in the cultures enriched with 10 and 50 mg L⁻¹ of 3,4,4',5-tetrachlorobiphenyl, whereas significantly higher dechlorination rates were observed in cultures enriched with 10 mg L⁻¹ of 3,3',4,4',5-pentachlorobiphenyl. No dechlorination was observed in sediment slurries enriched with 3,3',4,4',5,5'-hexachlorobipheny.

Characterization of a thermophilic L-rhamnose isomerase from Thermoanaerobacterium saccharolyticum NTOU1.

L-rhamnose isomerase (EC 5.3.1.

Effects of light and microbial activity on the degradation of two fluoroquinolone antibiotics in pond water and sediment.

Enrofloxacin (ENR) and ciprofloxacin (CIP) are two fluoroquinolone (FQ) antibiotics widely used to treat diseases of human beings and cultured animals. These two FQs are usually detected in the effluent of municipal sewage plants and related aquatic environments. The purpose of this study was to understand the fates of ENR and CIP in aquaculture pond water and a sediment slurry in a laboratory-scale experiment.

Impact of coplanar PCBs on microbial communities in anaerobic estuarine sediments.

The toxicity of three coplanar PCBs on microbial communities of an estuarine sediment were assessed. Sediment slurries were amended with 2, 10 and 50 mg/L of 345-4 CB, 345-34 CB and 345-345 CB, respectively under anaerobic conditions. The fate and effects of these coplanar PCBs were studied over 250 days.

Effects of oxygen on Shewanella decolorationis NTOU1 electron transfer to carbon-felt electrodes.

To clarify the major factor caused by oxygen-enhancing charge production of Shewanella decolorationis NTOU1 towards a polarized anode, a series of experimental runs (i.e., with/without ambient air flushing and with/without ammonia addition as nitrogen source) were conducted in this study.

Candida neustonensis sp. nov., a novel ascomycetous yeast isolated from the sea surface microlayer in Taiwan.

A new ascomycetous yeast species, Candida neustonensis is proposed in this study based on four strains (SN92(T), SN47, SJ22, SJ25) isolated from sea surface microlayer in Taiwan. These four yeast strains were morphologically, physiologically and phylogenetically identical to each other. No sexual reproduction was observed on 5% malt extract agar, corn meal agar, V8 agar, McClary's acetate agar and potato-dextrose agar.

Biodegradation of anthraquinone dyes by Shewanella sp. NTOU1 under anaerobic conditions.

Shewanella sp. NTOU1 was able to decolorize a range of anthraquinone dyes [Reactive Blue 4 (RB4), Reactive Blue 19 (RB19), Mordant Red 11 (MR11), Disperse Red 15 (DR15), and Disperse Blue 3 (DB3)] under anaerobic conditions. By supplementing the medium with formate and ferric citrate as the electron donor and acceptor, respectively and cultivating it under the optimum pH (8-9) and temperature (45 degrees C), this strain could decolorize these dyes (1,000 mg/L) at the initial color removal rates of 15-126 mg/L/h and the rates among them were RB19 > RB4 > DB3 > DR15 > MR11.

Cryptococcus keelungensis sp. nov., an anamorphic basidiomycetous yeast isolated from the sea-surface microlayer of the north-east coast of Taiwan.

Strain SN-82(T) was isolated from the sea-surface microlayer at Keelung on the north-east coast of Taiwan. Sequence analysis of the D1/D2 domain of the 26S rDNA of strain SN-82(T) suggested that this strain is related to the aerius clade in the Filobasidiales. Phenotypic characteristics such as the absence of sexual structures and ballistoconidia, the assimilation of myo-inositol and d-glucuronate, the inability to ferment glucose, the possession of coenzyme Q-10 and positive Diazonium blue B and urease reactions also indicated that this strain belongs to the genus Cryptococcus.

Biodegradation of crystal violet by a Shewanella sp. NTOU1.

A bacterial isolate, strain NTOU1, originally isolated from the cooling system in an oil refinery could decolorize and detoxify crystal violet under anaerobic conditions. The strain was characterized and identified as a member of Shewanella decolorationis based on Gram staining, morphology characters, biochemical tests, the 16S rRNA gene and the gyrase subunit beta gene (gyrB). The optimum pH value and temperature for decolorization of crystal violet by this strain under anaerobic conditions were pH 8-9 and 30-40 degrees C, respectively.

HPLC determination of pheophorbide a and pyropheophorbide a in dried laver product implicated in food poisoning.

In an outbreak of food poisoning involving a dried purple laver product (called nori), four persons had allergic-like symptoms such as inflammation and red rash on their face, mouth and belly. The causative nori was extracted and smeared on the arm-skin of five volunteers. Three out of five volunteers had a slight allergic reaction after 5 to 30 min when they were exposed to sunlight.

Accumulation of butyltin compounds in cobia Rachycentron canadum raised in offshore aquaculture sites.

Butyltin residues (monobutyltin, MBT; dibutyltin, DBT; tributyltin, TBT; tetrabutyltin, TeBT) in the sea water and in the cobia (Rachycentron canadum) from aquaculture sites located offshore of Penhu island, Taiwan, were collected and quantified. The average concentrations of MBT, DBT, TBT and TeBT in sea water were n.d.

The effects of benzoate, cyclohex-1-ene carboxylate, and cyclohexane carboxylate on biotransformation of o-phthalate in sediment slurries under sulfate-reducing conditions.

It was found in this study that while addition of the predicted intermediate product benzoate did not, addition of cyclohex-1-ene or cyclohexane carboxylate did inhibit the biotransformation of o-phthalate in sulfate-reducing o-phthalate-adapted sediment slurries under a CO2/H2 atmosphere. Biotransformation rates of benzoate were slightly higher than those of o-phthalate in sediment slurries amended with o-phthalate plus benzoate. By using the most probable number (MPN) method to determine the number of o-phthalate transformers, similar growth dynamics of o-phthalate transformers were observed in sediment slurries amended with or without benzoate.