GPMeta: a GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.

Metagenomic sequencing (mNGS) is a powerful diagnostic tool to detect causative pathogens in clinical microbiological testing owing to its unbiasedness and substantially reduced costs. Rapid and accurate classification of metagenomic sequences is a critical procedure for pathogen identification in dry-lab step of mNGS test. However, clinical practices of the testing technology are hampered by the challenge of classifying sequences within a clinically relevant timeframe.

Near-infrared ITO-based photonic hypercrystals with large angle-insensitive bandgaps.

The angle-sensitive photonic bandgap (PBG) is one of the typical features of one-dimensional photonic crystals. Based on the phase-variation compensation effect between the dielectric and hyperbolic metamaterials (HMMs), angle-insensitive PBGs can be realized in photonic hypercrystals. However, since hypercrystals are usually constructed using metal components, these angle-insensitive PBGs are mostly limited to narrow bandwidths in visible range.

Band evolution and Landau-Zener Bloch oscillations in strained photonic rhombic lattices.

We investigate band evolution of chiral and non-chiral symmetric flatband photonic rhombic lattices by applying a strain along the diagonal direction, and thereby demonstrating Landau-Zener Bloch (LZB) oscillations in the presence of a refractive index gradient. The chiral and non-chiral symmetric rhombic lattices are obtained by adding a detuning to uniform lattices. For the chiral symmetric lattices, the middle flatband is perturbed due to the chiral symmetry breaking while a nearly flatband appears as the bottom band with the increase of strain-induced next-nearest-neighbor hopping.

Nonreciprocal Tamm plasmon absorber based on lossy epsilon-near-zero materials.

Contrary to conventional Tamm plasmon (TP) absorbers of which narrow absorptance peaks will shift toward short wavelengths (blueshift) as the incident angle increases for both transverse magnetic (TM) and transverse electric (TE) polarizations, here we theoretically and experimentally achieve nonreciprocal absorption in a planar photonic heterostructure composed of an isotropic epsilon-near-zero (ENZ) slab and a truncated photonic crystal for TM polarization. This exotic phenomenon results from the interplay between ENZ and material loss. And the boundary condition across the ENZ interface and the confinement effect provided by the TP can enhance the absorption in the ENZ slab greatly.

Quasiperiodic metamaterials empowered non-metallic broadband optical absorbers.

Realizing a polarization-insensitive broadband optical absorber plays a key role in the implementation of microstructure optoelectrical devices with on-demand functionalities. However, the challenge is that most of these devices involve the constituent metals, thus suffering from poor chemical and thermal stability and a complicated manufacturing process. In addition, the extreme contrast between the negative (metallic) and positive (dielectric) real parts of the constituent permittivities can cause additional problems in the design of structural devices.

Direct Observation of Flatband Loop States Arising from Nontrivial Real-Space Topology.

Topological properties of lattices are typically revealed in momentum space using concepts such as the Chern number. Here, we study unconventional loop states, namely, the noncontractible loop states (NLSs) and robust boundary modes, mediated by nontrivial topology in real space. While such states play a key role in understanding fundamental physics of flatband systems, their experimental observation has been hampered because of the challenge in realizing desired boundary conditions.

Unconventional Flatband Line States in Photonic Lieb Lattices.

Flatband systems typically host "compact localized states" (CLS) due to destructive interference and macroscopic degeneracy of Bloch wave functions associated with a dispersionless energy band. Using a photonic Lieb lattice (LL), such conventional localized flatband states are found to be inherently incomplete, with the missing modes manifested as extended line states that form noncontractible loops winding around the entire lattice. Experimentally, we develop a continuous-wave laser writing technique to establish a finite-sized photonic LL with specially tailored boundaries and, thereby, directly observe the unusually extended flatband line states.

Enhanced Diffuse Reflectance and Microstructure Properties of Hybrid Titanium Dioxide Nanocomposite Coating.

In this research, we studied enhanced diffuse reflectance that can be achieved by excitations of multiple-scattering in a hybrid micro-structured titanium dioxide coating. Conventional approaches to obtain diffuse reflection structure rely heavily on exciting the scattering of randomly textured surface, whereas here, we reveal numerically and experimentally that, besides interface scattering, bulk scattering of ordered-disordered hybrid structure can be also employed to obtain highly efficient diffuse reflector. The diffuse reflectance over the measured wavelength region increases significantly with thickness, while angle and polarization-dependent specular reflections are suppressed.

Demonstration of flat-band image transmission in optically induced Lieb photonic lattices.

We present a simple, yet effective, approach for optical induction of Lieb photonic lattices, which typically rely on the femtosecond laser writing technique. Such lattices are established by judiciously overlapping two sublattices (an "egg-crate" lattice and a square lattice) with different periodicities through a self-defocusing photorefractive medium. Furthermore, taking advantage of the superposition of localized flat-band states inherent in the Lieb lattices, we demonstrate distortion-free image transmission in such two-dimensional perovskite-like photonic structures.

Observation of localized flat-band states in Kagome photonic lattices.

We report the first experimental demonstration of localized flat-band states in optically induced Kagome photonic lattices. Such lattices exhibit a unique band structure with the lowest band being completely flat (diffractionless) in the tight-binding approximation. By taking the advantage of linear superposition of the flat-band eigenmodes of the Kagome lattices, we demonstrate a high-fidelity transmission of complex patterns in such two-dimensional pyrochlore-like photonic structures.

Observation of self-trapping and rotation of higher-band gap solitons in two-dimensional photonic lattices.

We demonstrate self-trapping and rotation of higher-band dipole and quadruple-like gap solitons by single-site excitation in a two-dimensional square photonic lattice under self-focusing nonlinearity. Experimental results show that the second-band dipole gap solitons reside in the first photonic (Bragg reflection) gap, whereas the quadruple-like gap solitons are formed in an even higher photonic gap, resulting from modes of the third-band. Moreover, both dipole and quadruple-like gap solitons exhibit dynamical rotation around the lattice principle axes and the direction of rotation is changing periodically during propagation, provided that they are excited under appropriate initial conditions.