Publications by authors named "Shin Ishii"

Estimating human subjective difficulty in response to anticipated future events is an important technique for maintaining physical safety and mental well-being through effective load management. Towards to developing such techniques, we utilized electroencephalography (EEG) to estimate subjective difficulty associated with a forthcoming visual task. Our experiment entailed presenting participants with two visual stimuli during an initial anticipation period.

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Classical conditioning is a fundamental associative learning process in which repeated pairings of a conditioned stimulus (CS) with an unconditioned stimulus (US) lead to the CS eliciting a conditioned response (CR). Previous research has identified key neural regions involved in processing reward-predicting cues and mediating licking behavior. However, the mechanisms that sustain high conditioned response rates across repeated sessions remain elusive, particularly regarding how the reward expectation is represented on a session-by-session basis.

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Article Synopsis
  • To understand brain function in real-world settings, researchers used EEG to collect data during skateboarding, tackling challenges posed by environmental noise and artifacts through techniques like ASR and ICA.
  • The study employed a dual-task approach where participants received auditory stimuli while skateboarding, comparing the artifact cleaning effectiveness of various signal processing pipelines, including ASR and ICA.
  • Results indicated that the ASRICA pipeline, which combines ASR and ICA, significantly outperformed minimal cleaning and other methods, especially during skateboarding, demonstrating its effectiveness in handling non-stationary artifacts.
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Uncertainty abounds in the real world, and in environments with multiple layers of unobservable hidden states, decision-making requires resolving uncertainties based on mutual inference. Focusing on a spatial navigation problem, we develop a Tiger maze task that involved simultaneously inferring the local hidden state and the global hidden state from probabilistically uncertain observation. We adopt a Bayesian computational approach by proposing a hierarchical inference model.

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The primate brain has unique anatomical characteristics, which translate into advanced cognitive, sensory, and motor abilities. Thus, it is important that we gain insight on its structure to provide a solid basis for models that will clarify function. Here, we report on the implementation and features of the Brain/MINDS Marmoset Connectivity Resource (BMCR), a new open-access platform that provides access to high-resolution anterograde neuronal tracer data in the marmoset brain, integrated to retrograde tracer and tractography data.

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Introduction: The processes involved in how the attention system selectively focuses on perceptual and motor aspects related to a specific task, while suppressing features of other tasks and/or objects in the environment, are of considerable interest for cognitive neuroscience. The goal of this experiment was to investigate neural processes involved in selective attention and performance under multi-task situations. Several studies have suggested that attention-related gamma-band activity facilitates processing in task-specific modalities, while alpha-band activity inhibits processing in non-task-related modalities.

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The prefrontal cortex (PFC) has dramatically expanded in primates, but its organization and interactions with other brain regions are only partially understood. We performed high-resolution connectomic mapping of the marmoset PFC and found two contrasting corticocortical and corticostriatal projection patterns: "patchy" projections that formed many columns of submillimeter scale in nearby and distant regions and "diffuse" projections that spread widely across the cortex and striatum. Parcellation-free analyses revealed representations of PFC gradients in these projections' local and global distribution patterns.

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Magnetic resonance imaging (MRI) is a non-invasive neuroimaging technique that is useful for identifying normal developmental and aging processes and for data sharing. Marmosets have a relatively shorter life expectancy than other primates, including humans, because they grow and age faster. Therefore, the common marmoset model is effective in aging research.

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The purpose of this study was to evaluate the deformable image registration (DIR) accuracy using various CT scan parameters with deformable thorax phantom. Our developed deformable thorax phantom (Dephan, Chiyoda Technol Corp, Tokyo, Japan) was used. The phantom consists of a base phantom, an inner phantom, and a motor-derived piston.

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Article Synopsis
  • * Researchers developed a new method using deep neural networks to transform images, ensuring that the original and altered images share the same saliency map, despite looking unnatural.
  • * The study included human experiments to observe eye movements and brain activity, revealing that the altered images trigger different neural responses tied to attention processing types.
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  • Two-photon fluorescence microscopy allows for the imaging of deep neural structures in 3D, but struggles with lower image quality in the depth direction due to lens blur.
  • To improve image quality, a new approach uses convolutional neural networks (CNNs) to restore isotropic images by merging data from three different viewpoints.
  • The method employs a series of CNN models to handle complex processing efficiently and uses simulated images for self-supervised learning, resulting in significant enhancements in image clarity.
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Prediction ability often involves some degree of uncertainty-a key determinant of confidence. Here, we sought to assess whether predictions are decodable in partially-observable environments where one's state is uncertain, and whether this information is sensitive to confidence produced by such uncertainty. We used functional magnetic resonance imaging-based, partially-observable maze navigation tasks in which subjects predicted upcoming scenes and reported their confidence regarding these predictions.

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Reward reinforces the association between a preceding sensorimotor event and its outcome. Reinforcement learning (RL) theory and recent brain slice studies explain the delayed reward action such that synaptic activities triggered by sensorimotor events leave a synaptic eligibility trace for 1 s. The trace produces a sensitive period for reward-related dopamine to induce synaptic plasticity in the nucleus accumbens (NAc).

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  • The study explores how unexpected reward omissions lead to a decrease in dopamine signals in the brain, specifically affecting D2 receptor-expressing neurons, which are crucial for learning about rewards.
  • Researchers built a computational model to analyze how the short decline in dopamine (0.5-2 seconds) is detected by a signaling molecule called adenylate cyclase, requiring a specific balance between D2 receptors and regulators of G protein signaling.
  • Imbalances between these molecules have been linked to psychiatric conditions, such as schizophrenia and DYT1 dystonia, suggesting that individuals with these disorders may struggle to detect short dopamine dips, impacting their learning and response to rewards.
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How to effectively and efficiently extract valid and reliable features from high-dimensional electroencephalography (EEG), particularly how to fuse the spatial and temporal dynamic brain information into a better feature representation, is a critical issue in brain data analysis. Most current EEG studies work in a task driven manner and explore the valid EEG features with a supervised model, which would be limited by the given labels to a great extent. In this paper, we propose a practical hybrid unsupervised deep convolutional recurrent generative adversarial network based EEG feature characterization and fusion model, which is termed as EEGFuseNet.

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Precise spatiotemporal control of gene expression in the developing brain is critical for neural circuit formation, and comprehensive expression mapping in the developing primate brain is crucial to understand brain function in health and disease. Here, we developed an unbiased, automated, large-scale, cellular-resolution in situ hybridization (ISH)-based gene expression profiling system (GePS) and companion analysis to reveal gene expression patterns in the neonatal New World marmoset cortex, thalamus, and striatum that are distinct from those in mice. Gene-ontology analysis of marmoset-specific genes revealed associations with catalytic activity in the visual cortex and neuropsychiatric disorders in the thalamus.

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Diffusion-weighted magnetic resonance imaging (dMRI) allows non-invasive investigation of whole-brain connectivity, which can reveal the brain's global network architecture and also abnormalities involved in neurological and mental disorders. However, the reliability of connection inferences from dMRI-based fiber tracking is still debated, due to low sensitivity, dominance of false positives, and inaccurate and incomplete reconstruction of long-range connections. Furthermore, parameters of tracking algorithms are typically tuned in a heuristic way, which leaves room for manipulation of an intended result.

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By learning how the brain reacts to external visual stimuli and examining possible triggered brain statuses, we conduct a systematic study on an encoding problem that estimates ongoing EEG dynamics from visual information. A novel generalized system is proposed to encode the alpha oscillations modulated during video viewing by employing the visual saliency involved in the presented natural video stimuli. Focusing on the parietal and occipital lobes, the encoding effects at different alpha frequency bins and brain locations are examined by a real-valued genetic algorithm (GA), and possible links between alpha features and saliency patterns are constructed.

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Precise information on synapse organization in a dendrite is crucial to understanding the mechanisms underlying voltage integration and the variability in the strength of synaptic inputs across dendrites of different complex morphologies. Here, we used focused ion beam/scanning electron microscope (FIB/SEM) to image the dendritic spines of mice in the hippocampal CA1 region, CA3 region, somatosensory cortex, striatum, and cerebellum (CB). Our results show that the spine geometry and dimensions differ across neuronal cell types.

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Generalization is the ability to apply past experience to similar but non-identical situations. It not only affects stimulus-outcome relationships, as observed in conditioning experiments, but may also be essential for adaptive behaviors, which involve the interaction between individuals and their environment. Computational modeling could potentially clarify the effect of generalization on adaptive behaviors and how this effect emerges from the underlying computation.

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Animals remember temporal links between their actions and subsequent rewards. We previously discovered a synaptic mechanism underlying such reward learning in D1 receptor (D1R)-expressing spiny projection neurons (D1 SPN) of the striatum. Dopamine (DA) bursts promote dendritic spine enlargement in a time window of only a few seconds after paired pre- and post-synaptic spiking (pre-post pairing), which is termed as reinforcement plasticity (RP).

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We describe our connectomics pipeline for processing anterograde tracer injection data for the brain of the common marmoset (Callithrix jacchus). Brain sections were imaged using a batch slide scanner (NanoZoomer 2.0-HT) and we used artificial intelligence to precisely segment the tracer signal from the background in the fluorescence images.

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Image processing is one of the most important applications of recent machine learning (ML) technologies. Convolutional neural networks (CNNs), a popular deep learning-based ML architecture, have been developed for image processing applications. However, the application of ML to microscopic images is limited as microscopic images are often 3D/4D, that is, the image sizes can be very large, and the images may suffer from serious noise generated due to optics.

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Dopamine D2 receptors (D2Rs) are densely expressed in the striatum and have been linked to neuropsychiatric disorders such as schizophrenia. High-affinity binding of dopamine suggests that D2Rs detect transient reductions in dopamine concentration (the dopamine dip) during punishment learning. However, the nature and cellular basis of D2R-dependent behaviour are unclear.

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Article Synopsis
  • * Existing image processing methods struggle with the unique challenges posed by 2PM images, leading to the need for better solutions.
  • * The authors propose a new algorithm using deep convolutional neural networks with multiple U-nets that improve denoising in 2PM images, demonstrating significant performance benefits compared to current methods.
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