Publications by authors named "Shijie Xu"

Objectives: To assess the impact of artificial intelligence iterative reconstruction algorithms (AIIR) on image quality with phantom and clinical studies.

Methods: The phantom images were reconstructed with the hybrid iterative algorithm (HIR: Karl 3D-3, 5, 7, 9) and AIIR (grades 1-5) algorithm. Noise power spectra (NPS), task transfer functions (TTF) were measured, and additionally sharpness was assessed using a "blur metric" procedure.

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Phylogenetics has been widely used in molecular biology to infer the evolutionary relationships among species. With the rapid development of sequencing technology, genomic data with thousands of sites become increasingly common in phylogenetic analysis, while heterogeneity among sites arises as one of the major challenges. A single homogeneous model is not sufficient to describe the evolution of all sites and partitioned models are often employed to model the evolution of heterogeneous sites by partitioning them into distinct groups and utilizing distinct evolutionary models for each group.

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  • Severe fever with thrombocytopenia syndrome virus (SFTSV) is a highly infectious and deadly virus characterized by immune dysfunction and aggressive viral replication.
  • Research using MeRIP-seq has identified m6A modifications on SFTSV RNA, revealing that the protein YTHDF1 binds to these modifications and reduces the stability and translation of SFTSV proteins.
  • The virulence factor NSs from SFTSV increases the lactylation and degradation of YTHDF1, promoting viral replication by countering the antiviral actions of the host's immune response.
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Anomalous thermal behaviors of excitonic luminescence in CsPbBr perovskite quantum dots (PQDs) were observed. It is found that the main luminescence peak originated from the excitonic radiative recombination assisted by the longitudinal-optical (LO) phonon, and its integrated intensity first declines as the temperature varies from 10 to 150 K and then turns to increase at ∼160 K, reaching a maximum value at 300 K. A model considering the thermal detrapping and transfer of electrons from a trap level is developed to interpret these abnormal thermal behaviors of the luminescence from the PQDs.

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Objective: To explore the potential of the deep learning reconstruction (DLR) for ultralow dose calcium scoring CT (CSCT) with simultaneously reduced tube voltage and current.

Methods: In this prospective study, seventy-five patients (group A) undergoing routine dose CSCT (120kVp/30mAs) were followed by a low dose (120kVp/20mAs) scan and another 81 (group B) were followed by an ultralow dose (80kVp/20mAs) scan. The hybrid iterative reconstruction was used for the routine dose data while the DLR for data of reduced dose.

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Klebsiella pneumoniae poses a significant threat to global public health. Traditional clinical diagnostic methods, such as bacterial culture and microscopic identification, are not suitable for point-of-care testing. In response, based on the suboptimal protospacer adjacent motifs, this study develops an extraction-free one-pot assay, named EXORCA (EXtraction-free One-pot RPA-CRISPR/Cas12a assay), designed for the immediate, sensitive and efficient detection of K.

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G-Quadruplex/thioflavin (G4/THT) has become a very promising label-free fluorescent luminescent element for nucleic acid detection due to its good programmability and compatibility. However, the weak fluorescence efficiency of single-molecule G4/THT limits its potential applications. Here, we developed an entropy-driven catalytic (EDC) G4 (EDC-G4) cycle amplification technology as a universal label-free signal amplification and output system by properly programming classical EDC and G4 backbone sequences, preintegrated ligase chain reaction (LCR) for label-free sensitive detection of single nucleotide polymorphisms (SNPs).

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Article Synopsis
  • Genome integration technology can speed up the creation of cell factories, but integrating large DNA fragments remains a challenge.
  • A new method called CRISPR/Cas9 based integration of large DNA fragments (CILF) has been developed to efficiently integrate these fragments in yeast (Saccharomyces cerevisiae).
  • The CILF method shows high success rates—98% for 10 kb fragments and about 80% for 40 kb—with the potential to enhance synthetic biology and metabolic engineering.
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G-quadruplex/thioflavin T (G4/THT) is one of the ideal label-free fluorescent light-emitting elements in the field of biosensors due to its good programmability and adaptability. However, the unsatisfactory luminous efficiency of single-molecule G4/THT limits its more practical applications. Here, we developed a G4 embedded semi-catalytic hairpin assembly (G4-SCHA) reaction by rationally modifying the traditional CHA reaction, and combined with the invasive reaction, supplemented by magnetic separation technology, for label-free sensitive detection of single nucleotide polymorphisms (SNPs).

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Recently, ViT and CNNs based on encoder-decoder architecture have become the dominant model in the field of medical image segmentation. However, there are some deficiencies for each of them: (1) It is difficult for CNNs to capture the interaction between two locations with consideration of the longer distance. (2) ViT cannot acquire the interaction of local context information and carries high computational complexity.

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The development of all-solid-state lithium-sulfur batteries (ASSLSBs) toward large-scale electrochemical energy storage is driven by the higher specific energies and lower cost in comparison with the state-of-the-art Li-ion batteries. Yet, insufficient mechanistic understanding and quantitative parameters of the key components in sulfur-based cathode hinders the advancement of the ASSLSB technologies. This review offers a comprehensive analysis of electrode parameters, including specific capacity, voltage, S mass loading and S content toward establishing the specific energy (Wh kg) and energy density (Wh L) of the ASSLSBs.

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Background: Epicardial adipose tissue (EAT) is unique type of visceral adipose tissue, sharing the same microcirculation with myocardium. This study aimed to assess the imaging features of EAT in patients with acute myocarditis (AM) and explore the relationships with clinical characteristics.

Methods: For this retrospective case-control study, totally 38 AM patients and 52 controls were screened retrospectively from January 2019 to December 2022, and the EAT volume was measured from coronary computed tomography (CT) angiography imaging.

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Single-nucleotide polymorphism (SNP) is widely used in the study of disease-related genes and in the genetic study of animal and plant strains. Therefore, SNP detection is crucial for biomedical diagnosis and treatment as well as for molecular design breeding of animals and plants. In this regard, this article describes a novel technique for detecting SNP using flap endonuclease 1 (FEN 1) as a specific recognition element and catalytic hairpin assembly (CHA) cascade reaction as a signal amplification strategy.

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Single nucleotide polymorphism (SNP) biosensors are emerging rapidly for their promising applications in human disease prevention diagnosis, treatment, and prognosis. However, it remains a bottleneck in equipping simple and stable biosensors with the traits of high sensitivity, non-enzyme, and low cost. Double base mismatches mediated chain displacement reactions have attracted fascinating advantages of tailorable thermodynamics stability, non-enzyme, and excellent assembly compliance to involvement in SNP identification.

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  • The study explores how fear responses can resurface in new situations and the challenges this poses for therapies that aim to reduce fear.
  • Researchers investigated the role of specific brain regions (posterior parietal cortex and anterior cingulate cortex) using advanced techniques to understand the circuits involved in fear relapse.
  • Findings revealed that the pathway from the PPC to the ACC is crucial for this fear resurgence, with changes in neuron activity and the influence of parvalbumin-expressing interneurons affecting this process.
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  • * Researchers discovered two types of anomalous Hall effect (AHE) in MnPt: one from intrinsic mechanisms linked to time-reversal symmetry breaking, and another from skew scattering due to out-of-plane spin configuration.
  • * They propose a universal scaling law for AHE resistivity that incorporates factors from both scattering mechanisms, which can be influenced by electron interactions and could impact future chiral spintronics technology.
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A new type of titanium phthalate (Ti-PA) catalyst was prepared by exchange method of phthalic acid and isopropyl titanate, which is never been reported before. The Ti-PA catalyst was characterized by FT-IR, TG, Uv-vis, BET, SEM, and EDS. The Ti-PA catalyst shows good catalytic activity in the alcoholysis reaction of polyethylene terephthalate (PET) and optimal experimental conditions for the alcoholysis process were optimized by response surface methodology; the Ti-PA catalyst provided a BHET yield of 81.

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  • - The 3-Hydroxypropionic acid (3-HP) pathway is an effective natural method for fixing carbon, particularly using bicarbonate, and is notable for its aerobic carbon fixation capabilities.
  • - Mesaconate, a valuable product of the 3-HP pathway, can be utilized in creating fire-retardant materials and hydrogels.
  • - This study focuses on optimizing the 3-HP sub-pathway in yeast (Saccharomyces cerevisiae) by adjusting the expression of certain enzymes, achieving mesaconate production of 90.78 mg/L with glucose and 61.2 mg/L with ethanol.
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Background: IgA nephropathy (IgAN), a condition posing a significant threat to public health, currently lacks a specific treatment protocol. Research has underscored the potential benefits of traditional Chinese medicine (TCM) for treating IgAN. Nevertheless, the effectiveness of various intervention strategies, such as combining TCM with angiotensin-converting enzyme inhibitors (ACEIs) or angiotensin II receptor blockers (ARBs), lacks a comprehensive systematic comparison.

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  • * Phage LHE83 has a contractile tail, a high titer, good tolerance to physical and chemical conditions, and shows a significant growth behavior with a latent period of about 10 minutes and a burst size of 87 pfu/cell.
  • * The study identified OmpA as the receptor for phage LHE83, confirmed through specific assays, and demonstrated a synergistic effect between phage LHE83 and the antibiotic spectinomycin against a drug-resistant E. coli strain, aiding in
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Severe fever with thrombocytopenia syndrome (SFTS) is a life-threatening disease caused by a novel bunyavirus (SFTSV), mainly transmitted by ticks. With no effective therapies or vaccines available, understanding the disease's mechanisms is crucial. Recent studies found increased expression of programmed cell death-1 (PD-1) on dysfunctional T cells in SFTS patients.

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We report a "solo-solvent liquid-phase" method of synthesizing a highly-favored sulfide electrolyte (LiPSCl) for developing all-solid-state lithium batteries. The key chemistry for such a successful method is that tetrahydropyrrole enables synthesis of the critical precursor LiS from cheap and air-stable precursors of lithium chloride and sodium sulfide.

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Odd-numbered fatty acids (FAs) have been widely used in nutrition, agriculture, and chemical industries. Recently, some studies showed that they could be produced from bacteria or yeast, but the products are almost exclusively odd-numbered long-chain FAs. Here we report the design and construction of two biosynthetic pathways in Saccharomyces cerevisiae for de novo production of odd-numbered medium-chain fatty acids (OMFAs) via ricinoleic acid and 10-hydroxystearic acid, respectively.

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Behavioral sensitization is defined as the enhanced behavioral response to drugs of abuse after repeated exposure, which can serve as a behavioral model of addiction. Our previous study demonstrated that behavioral cross-sensitization occurs between cocaine and ethanol, suggesting commonalities between these drugs. N-methyl-d-aspartate (NMDA) receptors play important roles in synaptic plasticity, learning, memory, and addiction-associated behaviors.

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Synopsis of recent research by authors named "Shijie Xu"

  • - Shijie Xu's recent research focuses on diverse applications across bioengineering, medical imaging, and nanotechnology, including the development of advanced diagnostic tools and energy storage systems.
  • - Notable findings include the discovery of abnormal temperature behaviors in luminescence of CsPbBr perovskite quantum dots and the introduction of a novel extraction-free assay for rapid detection of Klebsiella pneumoniae using RPA and CRISPR/Cas12a technologies.
  • - Additionally, Xu has contributed to enhancing medical imaging techniques through deep learning image reconstruction and has explored new methodologies for the label-free detection of single-nucleotide polymorphisms, significantly advancing the field of biosensors.