SCARA5 deficiency inhibits ferroptosis via regulating iron homeostasis and results in sorafenib resistance in hepatocellular carcinoma.

SCARA5 (Scavenger Receptor Class A Member 5), a member of scavenger receptor class A, is a type II transmembrane protein. Previous studies, including our own, have suggested that SCARA5 acts as a tumor suppressor in various cancers. Additionally, SCARA5 has been identified as a ferritin receptor that facilitates iron delivery independent of transferrin.

The effects of phosphorus on the fate and transformation of sediment-associated cadmium from river sediments.

The coexistence of phosphorus (P) and cadmium (Cd) in river sediments poses a significant challenge for remediating these contaminants in aquatic environments, given the ongoing debates regarding their interactions. This study aimed to elucidate the impact of water-soluble phosphorus (PO) on the fate and transformation of sediment-associated Cd under varying conditions. The findings revealed that the impact of PO on the release of sediment-associated Cd depends on the presence or absence of cations such as Ca and Mg, with Ca exerting a more pronounced effect than Mg.

Heterochromatin formation and remodeling by IRTKS condensates counteract cellular senescence.

Heterochromatin, a key component of the eukaryotic nucleus, is fundamental to the regulation of genome stability, gene expression and cellular functions. However, the factors and mechanisms involved in heterochromatin formation and maintenance still remain largely unknown. Here, we show that insulin receptor tyrosine kinase substrate (IRTKS), an I-BAR domain protein, is indispensable for constitutive heterochromatin formation via liquid‒liquid phase separation (LLPS).

Mutational signature and prognosis in adenocarcinoma of the bladder.

Adenocarcinoma of the bladder is a rare urinary bladder carcinoma with limited therapy options due to lack of molecular characterization. Here, we aimed to reveal the mutational and transcriptomic landscapes of adenocarcinoma of the bladder and assess any relationship with prognosis. Between February 2015 and June 2021, a total of 23 patients with adenocarcinoma of the bladder were enrolled.

Single-cell RNA sequencing reveals the heterogeneity and intercellular communication of hepatic stellate cells and macrophages during liver fibrosis.

Uncontrolled and excessive progression of liver fibrosis is thought to be the prevalent pathophysiological cause of liver cirrhosis and hepatocellular cancer, and there are currently no effective antifibrotic therapeutic options available. Intercellular communication and cellular heterogeneity in the liver are involved in the progression of liver fibrosis, but the exact nature of the cellular phenotypic changes and patterns of interregulatory remain unclear. Here, we performed single-cell RNA sequencing on nonparenchymal cells (NPCs) isolated from normal and fibrotic mouse livers.

Aberrant alteration of peripheral B lymphocyte subsets in hepatocellular carcinoma patients.

Although B lymphocytes are widely known to participate in the immune response, the conclusive roles of B lymphocyte subsets in the antitumor immune response have not yet been determined. Single-cell data from GEO datasets were first analyzed, and then a B cell flow cytometry panel was used to analyze the peripheral blood of 89 HCC patients and 33 healthy controls recruited to participate in our research. Patients with HCC had a higher frequency of B10 cells and a lower percentage of MZB cells than healthy controls.

Simulation the potential distribution of and its hosts, and , under climate change in China.

Due to climate change, it is significant to explore the impact of rising temperatures on the distribution of Lajonquiere (Lepidoptera) and its host plants, and , and to simulate their suitable future distribution areas in order to provide a theoretical basis for the monitoring of, and early warning about, and the formulation of effective prevention and control policies. Based on the known distribution areas of, and relevant climate data for, , , and , their suitable habitat in China was predicted using the ENMeval data package in order to adjust the maximum entropy (MaxEnt) model parameters. The results showed that the regularization multiplier was 0.

Accurate tumor clonal structures require single-cell analysis.

Tumor clonal structure is closely related to future progression, which has been mainly investigated as mutation abundance clustering in bulk samples. With relatively limited studies at single-cell resolution, a systematic comparison of the two approaches is still lacking. Here, using bulk and single-cell mutational data from the liver and colorectal cancers, we checked whether co-mutations determined by single-cell analysis had corresponding bulk variant allele frequency (VAF) peaks.

Regionwise Generative Adversarial Image Inpainting for Large Missing Areas.

Recently, deep neural networks have achieved promising performance for in-filling large missing regions in image inpainting tasks. They have usually adopted the standard convolutional architecture over the corrupted image, leading to meaningless contents, such as color discrepancy, blur, and other artifacts. Moreover, most inpainting approaches cannot handle well the case of a large contiguous missing area.

Simulation of the potential distribution of rare and endangered species in China under climate change.

is an endangered and rare genus of plant that has various pharmacodynamic functions. In this study, optimized MaxEnt models were used in analyzing potential geographical distributions under current and future climatic conditions (the 2050s and 2070s) and dominant environmental variables influencing their geographic distribution. The results provided reference for implementation of long-term conservation and management approaches for the species.

Exposure to aristolochic acid I is associated with poor prognosis of liver cancer patients.

The aristolochic acids (AAs), derived from and species used widely in herbal medicines, are closely associated with liver cancer. The major AA derivatives are aristolochic acid I (AAI) and II (AAII), which can bind DNA covalently to form AA-DNA adducts after metabolic activation in vivo. Among all these AA-DNA adducts, 7-(deoxyadenosine-N-yl) aristolactam I (dA-AL-I) is the most abundant and persistent DNA lesion in patients.

Transductive Relation-Propagation With Decoupling Training for Few-Shot Learning.

Few-shot learning, aiming to learn novel concepts from one or a few labeled examples, is an interesting and very challenging problem with many practical advantages. Existing few-shot methods usually utilize data of the same classes to train the feature embedding module and in a row, which is unable to learn adapting to new tasks. Besides, traditional few-shot models fail to take advantage of the valuable relations of the support-query pairs, leading to performance degradation.

Clonal evolution in liver cancer at single-cell and single-variant resolution.

Genetic heterogeneity of tumor is closely related to its clonal evolution, phenotypic diversity and treatment resistance, and such heterogeneity has only been characterized at single-cell sub-chromosomal scale in liver cancer. Here we reconstructed the single-variant resolution clonal evolution in human liver cancer based on single-cell mutational profiles. The results indicated that key genetic events occurred early during tumorigenesis, and an early metastasis followed by independent evolution was observed in primary liver tumor and intrahepatic metastatic portal vein tumor thrombus.

Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment.

Cancer immunotherapy has revolutionized cancer treatment, and it relies heavily on the comprehensive understanding of the immune landscape of the tumor microenvironment (TME). Here, we obtain a detailed immune cell atlas of esophageal squamous cell carcinoma (ESCC) at single-cell resolution. Exhausted T and NK cells, regulatory T cells (Tregs), alternatively activated macrophages and tolerogenic dendritic cells are dominant in the TME.