Publications by authors named "Shiaki A Minami"

Light-inducible regulation of cellular pathways and gene circuits in mammalian cells is a new frontier in mammalian genetic engineering. Optogenetic mammalian cell cultures, which are light-sensitive engineered cells, utilize light to regulate gene expression and protein activity. As a low-cost, tunable, and reversible input, light is highly adept at spatiotemporal and orthogonal regulation of cellular behavior.

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SARS-CoV-2 Spike is a key protein that mediates viral entry into cells and elicits antibody responses. Its importance in infection, diagnostics, and vaccinations has created a large demand for purified Spike for clinical and research applications. Spike is difficult to express, prompting modifications to the protein and expression platforms to improve yields.

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Article Synopsis
  • Viruses rely on host cells' machinery to replicate, often interfering with host protein functions, which can lead to diseases that benefit the virus or occur by chance.
  • Understanding how viruses interact with host proteins helps reveal the molecular processes behind virus replication and disease caused by these infections.
  • The review discusses systems biology methods for identifying virus-host interactions and innovations that help researchers transition from generating hypotheses to understanding mechanisms more quickly.
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Highly detailed steered molecular dynamics simulations are performed on differently glycosylated receptor binding domains of the severe acute respiratory syndrome coronavirus-2 spike protein. The binding strength and the binding range increase with glycosylation. The interaction energy rises very quickly when pulling the proteins apart and only slowly drops at larger distances.

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Background: Chinese hamster ovary (CHO) cells are widely used for industrial production of biopharmaceuticals. Many genetic, chemical, and environmental approaches have been developed to modulate cellular pathways to improve titers. However, these methods are often irreversible or have off-target effects.

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