Publications by authors named "Shi-Yi Chen"

Meat rabbits are a small herbivorous livestock and have been popularly raised in China for producing high-quality meat. Therefore, it is economically important to genetically improve both carcass performance and meat quality in meat rabbits. However, we still know less about the underlying candidate genes that may determine phenotypic variation on carcass and meat traits of meat rabbits.

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Endometriosis is a chronic inflammatory disease and an estrogen-dependent disease, so dietary factors that can modulate estrogen activity may be clinically important. Dietary fiber, widely distributed in vegetables and fruits, is closely associated with a plant-based diet. Therefore, this study aims to analyze and explore the relationship between dietary fiber intake and the risk of endometriosis providing insights for future clinical significance and treatment approaches.

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  • The study analyzed genetic and microbial data from 739 New Zealand White rabbits to assess traits related to growth and feed efficiency, focusing on body weight and average daily gain.
  • Results showed that certain growth traits had high heritability, suggesting genetic potential for improvement, while gut microbiota had little impact on these traits, aiding in developing breeding plans for meat rabbits.
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Understanding and assessing dairy cattle behavior is critical for developing sustainable breeding programs and management practices. The behavior of individual animals can provide valuable information on their health and welfare status, improve reproductive management, and predict efficiency traits such as feed efficiency and milking efficiency. Routine genetic evaluations of animal behavior traits can contribute to optimizing breeding and management strategies for dairy cattle but require the identification of traits that capture the most important biological processes involved in behavioral responses.

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Inhibin beta A (INHBA) and its homodimer activin A have pleiotropic effects on modulation of immune responses and tumor progression, but it remains uncertain whether tumors may release activin A to regulate anti-tumor immunity. In this study we investigated the effects and mechanisms of tumor intrinsic INHBA on carcinogenesis, tumor immunity and PD-L1 blockade. Bioinformatic analysis on the TCGA database revealed that INHBA expression levels were elevated in 33 cancer types, including breast cancer (BRCA) and colon adenocarcinoma (COAD).

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  • * A study evaluated inbreeding levels in two yak populations (Maiwa and Jiulong) using genome-wide SNP data, revealing Jiulong yaks had greater genetic diversity than Maiwa yaks.
  • * The analysis identified higher genomic inbreeding in Maiwa yaks and detected numerous runs of homozygosity and homozygous-by-descent segments, highlighting significant genetic distinctions between the two populations.
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Objective: Pertussis cases have increased markedly since 2018 in Guangxi. The aim of this study was to evaluate antibody levels and the infection status of pertussis in the resident population.

Method: A total of 10,215 serum samples from residents were collected from August-November 2018 and tested for anti-pertussis IgG and toxin IgG using the enzyme-linked immunosorbent assay (ELISA).

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  • Udder conformation impacts key factors like milk yield, cow health, and overall welfare, making it important for efficient dairy farming practices, especially with the rise of automatic milking systems (AMS).
  • AMS technology records detailed data on udder traits by measuring teat positions in 3D during milking, which reduces human error in traditional scoring methods.
  • This study analyzes data from over 4,480 Holstein cows to estimate genetic parameters for udder traits and their relationships to milk production, revealing the potential for improving cow genetics for better performance in automated milking environments.
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  • Designing adaptive materials that change their mechanical properties in response to external factors can prevent failure and increase their lifespan.
  • Current adaptive polymers face issues like low load capacity, irreversible changes, high costs, and limited responsiveness.
  • The introduction of dynamic coordination bonds led to the creation of new polymers (PBMBD-Fe and PBMBD-Co) that are temperature- and rate-responsive, showcasing benefits like improved energy dissipation, self-healing, and 3D printing capabilities, making them viable for durable and customizable impact resistance applications.
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Identifying genome-enabled methods that provide more accurate genomic prediction is crucial when evaluating complex traits such as dairy cow behavior. In this study, we aimed to compare the predictive performance of traditional genomic prediction methods and deep learning algorithms for genomic prediction of milking refusals (MREF) and milking failures (MFAIL) in North American Holstein cows measured by automatic milking systems (milking robots). A total of 1,993,509 daily records from 4,511 genotyped Holstein cows were collected by 36 milking robot stations.

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Rabbits are an attractive meat livestock species that can efficiently convert human-indigestible plant biomass, and have been commonly used in biological and medical researches. Yet, transcriptomic landscape in muscle tissue and association between gene expression level and growth traits have not been specially studied in meat rabbits. In this study Oxford Nanopore Technologies (ONT) long-read sequencing technology was used for comprehensively exploring transcriptomic landscape in Longissimus dorsi for 115 rabbits at 84 days of age, and transcriptome-wide association studies (TWAS) were performed for growth traits, including body weight at 84 days of age and average daily gain during three growth periods.

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Background: Avulsion fractures of fibula occur with ankle sprains. The purpose of this study was to compare the biomechanical characteristics of double-row suture versus compression screw techniques in treatment of lateral malleolar avulsion fracturelarger than 10 mm in size, which is typically not associated with an anterior talofibular ligament injury.

Methods: We simulated lateral malleolus avulsion fractures in six matched pairs of 12 human cadaveric ankles.

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Background: Ossicles of avulsed fractures of the lateral malleolus can result in pain or chronic ankle instability. The purpose of this study was to evaluate and compare the arthroscopic double-row fixation procedure with anatomic ankle lateral ligaments reconstruction for the treatment of ankle lateral ligaments injury with os subfibulare.

Methods: This retrospective study included 38 patients with ankle lateral ligaments injury with concomitant os subfibulare who were treated between July 2016 and November 2021.

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Background: Superior capsular reconstruction (SCR) with long head of biceps tendon (LHBT) transposition was developed to massive and irreparable rotator cuff tears (MIRCTs); however, the outcomes of this technique remain unclear.

Aim: To perform a systematic review of biomechanical outcomes and a meta-analysis of clinical outcomes after LHBT transposition for MIRCTs.

Methods: We performed a systematic electronic database search on PubMed, EMBASE, and Cochrane Library.

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Introduction: Tuberculosis (TB) poses a serious challenge to global health systems. The altered intestinal microbiota is associated with the pathogenesis of TB, but the exact links remain unclear.

Methods: 16 S rDNA sequencing was performed to comprehensively detect the changes in the intestinal microbiota of feces from active TB (ATB), latent TB infection (LTBI) and healthy controls (HC).

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Breeding more resilient animals will benefit the dairy cattle industry in the long term, especially as global climate changes become more severe. Previous studies have reported genetic parameters for various milk yield-based resilience indicators, but the underlying genomic background of these traits remain unknown. In this study, we conducted GWAS of 62,029 SNPs with 4 milk yield-based resilience indicators, including the weighted occurrence frequency (wfPert) and accumulated milk losses (dPert) of milk yield perturbations, and log-transformed variance (LnVar) and lag-1 autocorrelation (r) of daily yield residuals.

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Purpose: Distinguishing latent tuberculosis infection (LTBI) from active tuberculosis (ATB) is important to control the prevalence of tuberculosis; however, there is currently no effective method. The aim of this study was to discover specific metabolites through fecal untargeted metabolomics to discriminate ATB, individuals with LTBI, and healthy controls (HC) and to probe the metabolic perturbation associated with the progression of tuberculosis.

Patients And Methods: Liquid chromatography-tandem mass spectrometry (LC-MS/MS) was performed to comprehensively detect compounds in fecal samples from HC, LTBI, and ATB patients.

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Coat color is an important phenotypic characteristic of the domestic rabbit () and has specific economic importance in the Rex rabbit industry. Coat color varies considerably among different populations of rabbits, and several causal genes for this variation have been thoroughly studied. Nevertheless, the candidate genes affecting coat color variation in Chinese Rex rabbits remained to be investigated.

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Background: Fibroblast plays a major role in tendon-bone healing. Exosomes derived from bone marrow mesenchymal stem cells (BMSCs) can activate fibroblasts and promote tendon-bone healing the contained microRNAs (miRNAs). However, the underlying mechanism is not comprehensively understood.

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Article Synopsis
  • Climate change and animal welfare emphasize the need for breeding resilient dairy cattle that can withstand environmental challenges, with resilience assessed through daily milk yield anomalies during lactation.
  • A study analyzing over 5.6 million daily milk yield records from nearly 12,000 Holstein cows identified four resilience indicators, revealing that the log-transformed variance (LnVar) had the highest heritability estimates compared to the others across different lactations.
  • The analysis also showed stronger genetic correlations between lactations 2 and 3 for the resilience indicators, suggesting that these indicators may represent distinct traits that should be evaluated separately in genetic studies.
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Room-temperature phosphorescence (RTP) polymers, whose emission can persist for a long period after photoexcitation, are of great importance for practical applications. Herein, dynamic covalent boronic ester linkages with internal B-N coordination are incorporated into a commercial epoxy matrix. The reversible dissociation of B-N bonds upon loading provides an efficient energy dissipation pathway for the epoxy network, while the rigid epoxy matrix can inhibit the quenching of triplet excitons in boronic esters.

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Objective: Excessive postoperative sliding is a common complication of intramedullary nails in the treatment of intertrochanteric femur fractures. The aim of this study was to identify risk factors for excessive postoperative sliding in the intertrochanteric fractures treated with an intramedullary nail.

Methods: A retrospective analysis of 369 patients with femoral intertrochanteric fractures treated with short intramedullary nails between February 2017 and September 2020 was performed.

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