Publications by authors named "Sharmila D"

The global demand for food production is escalating, necessitating innovative approaches to mitigate pest-related crop losses. Conventional pest management using synthetic pesticides has several drawbacks, promoting the search for eco-friendly alternatives such as biopesticides. Among these, Bacillus thuringiensis (Bt)-based biopesticides have emerged as a promising option due to their specificity, sustainability, and safety.

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Article Synopsis
  • Tomato crops are under threat from the Groundnut bud necrosis orthotospovirus (GBNV), and traditional control methods like plant removal and insecticides have proven inconsistent.
  • A new approach using Plant Growth Promoting Rhizobacteria (PGPR) encapsulated in nanosilica showed promise in boosting plant resistance and effectiveness against GBNV.
  • The study found that this nanoencapsulated method significantly reduced virus lesions in both cowpea and tomato plants, suggesting a viable new strategy for crop protection.
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Skeletal muscle (SM) fat infiltration, or intermuscular adipose tissue (IMAT), reflects muscle quality and is associated with inflammation, a key determinant in cardiometabolic disease. Coronary flow reserve (CFR), a marker of coronary microvascular dysfunction (CMD), is independently associated with BMI, inflammation and risk of heart failure, myocardial infarction and death. We sought to investigate the relationship between skeletal muscle quality, CMD and cardiovascular outcomes.

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Bud blight disease caused by groundnut bud necrosis virus (GBNV) is a serious constraint in the cultivation of agricultural crops such as legumes, tomato, chilies, potato, cotton etc. Owing to the significant damage caused by GBNV, an attempt was made to identify suitable organic antiviral agents through molecular modelling of the nucleocapsid Coat Protein of GBNV; molecular docking and molecular dynamics that disclosed the interaction of the ligands viz., Squalene and Ganoderic acid-A with coat protein of GBNV.

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  • Statistical optimization models were used to optimize the adsorption of textile dye effluent, identifying key factors like time, pH, and dye concentration through Plackett-Burman design and further refined using Box-Behnken design.
  • The model's predictions closely matched experimental results, achieving a high coefficient of determination (0.9935), indicating significant reliability, and optimal conditions for maximum decolorization were found to be 131.51 minutes, pH 7.48, and 23.13% dye concentration.
  • The experimental validation showed a 92.65% decolorization efficiency, and various analytical techniques (like FTIR and HR-SEM-EDX) were employed to confirm the findings, along with desorption studies
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Large numbers of bioactive natural products from plant species such as alkaloids, phenolics, terpenoids etc. are remaining unexplored for their potential as plant protective agents as inhibitors for viral and other pathogenic infections of plant. aphids are important plant pests and vectors for several plant viruses.

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Reactions of cyclopentadienyl transition-metal halide complexes [Cp*Mo(CO)Cl], 1, and [CpFe(CO)I], 2, (Cp = CH; Cp* = η-CMe) with borate ligands are reported. Treatment of 1 with [NaBt] (Bt = dihydrobis(2-mercapto-benzothiazolyl)borate) in toluene yielded [Cp*Mo(CO)(CHSN)], 3, and [Cp*Mo(CO)(η-CHCH)], 4, with a selective binding of toluene through C-H activation followed by orthometallation. Note that compound 4 is a structurally characterized toluene-activated molecule in which the metal is in η-coordination mode.

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Newer and novel laccases attract considerable attention due to its promising and valuable multiple applications in biotech industry. This present investigation documents, for the first time, on high level extracellular secretion of laccase (LccH) in newly isolated wood-degrading basidiomycete Hexagonia hirta MSF2. LccH was optimally active at 40°C in citrate phosphate buffer with a pH of 3.

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The present study depicts the development of a validated reversed-phase high performance liquid chromatographic method for the determination of the everolimus in presence of degradation products or pharmaceutical excipients. Stress study was performed on everolimus and it was found that it degrade sufficiently in oxidizing and acidic conditions but less degradation was found in alkaline, neutral, thermal and photolytic conditions. The separation was carried out on Hypersil BDS C18 column (100×4.

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Cholera is an infectious disease caused by cholera toxin (CT) protein of bacterium Vibrio cholerae. A sequence of sialic acid (N-acetylneuraminic acid, NeuNAc or Neu5Ac) analogues modified in its C-5 position is modelled using molecular modelling techniques and docked against the CT followed by molecular dynamics simulations. Docking results suggest better binding affinity of NeuNAc analogue towards the binding site of CT.

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Even after so much advancement in gene expression microarray technology, the main hindrance in analyzing microarray data is its limited number of samples as compared to a number of factors, which is a major impediment in revealing actual gene functionality and valuable information from the data. Analyzing gene expression data can indicate the factors which are differentially expressed in the diseased tissue. As most of these genes have no part to play in causing the disease of interest, thus, identification of disease-causing genes can reveal not just the case of the disease, but also its pathogenic mechanism.

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A combined experimental and quantum chemical study of Group 7 borane, trimetallic triply bridged borylene and boride complexes has been undertaken. Treatment of [{Cp*CoCl}2 ] (Cp*=1,2,3,4,5-pentamethylcyclopentadienyl) with LiBH4 ⋅thf at -78 °C, followed by room-temperature reaction with three equivalents of [Mn2 (CO)10 ] yielded a manganese hexahydridodiborate compound [{(OC)4 Mn}(η(6) -B2 H6 ){Mn(CO)3 }2 (μ-H)] (1) and a triply bridged borylene complex [(μ3 -BH)(Cp*Co)2 (μ-CO)(μ-H)2 MnH(CO)3 ] (2). In a similar fashion, [Re2 (CO)10 ] generated [(μ3 -BH)(Cp*Co)2 (μ-CO)(μ-H)2 ReH(CO)3 ] (3) and [(μ3 -BH)(Cp*Co)2 (μ-CO)2 (μ-H)Co(CO)3 ] (4) in modest yields.

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Molecular modeling of synthetic methyl-α-Neu5Ac analogues modified in C-9 position was investigated by molecular docking and molecular dynamics (MD) simulation methods. Methyl-α-Neu5Ac analogues were docked against cholera toxin (CT) B subunit protein and MD simulations were carried out for three Methyl-α-Neu5Ac analogue-CT complexes (30, 10 and 10 ns) to estimate the binding activity of cholera toxin-Methyl-α-Neu5Ac analogues using OPLS_2005 force field. In this study, direct and water mediated hydrogen bonds play a vital role that exist between the methyl-α-9-N-benzoyl-amino-9-deoxy-Neu5Ac (BENZ)-cholera toxin active site residues.

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The emergence of multiple web pages day by day leads to the development of the semantic web technology. A World Wide Web Consortium (W3C) standard for storing semantic web data is the resource description framework (RDF). To enhance the efficiency in the execution time for querying large RDF graphs, the evolving metaheuristic algorithms become an alternate to the traditional query optimization methods.

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Cholera toxin (CT) is an AB5 protein complex secreted by the pathogen Vibrio cholera, which is responsible for cholera infection. N-acetylneuraminic acid (NeuNAc) is a derivative of neuraminic acid with nine-carbon backbone. NeuNAc is distributed on the cell surface mainly located in the terminal components of glycoconjugates, and also plays an important role in cell-cell interaction.

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The objective of the present study is to model the analogues of monosialoganglioside (GM3) by making modifications in its sialic acid residue with different substitutions in aqueous environment and to determine their structural stability based upon computational molecular dynamics. Molecular mechanics and molecular dynamics investigation was carried out to study the conformational preferences of the analogues of GM3. Dynamic simulations were carried out on the analogues of GM3 varying in the substituents at C-1, C-4, C-5, C-8 and C-9 positions of their sialic acid or Neuraminic acid (NeuAc) residue.

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Cluster expansion reactions of cobaltaboranes were carried out using mono metal-carbonyls, metal halides and dichalcogenide ligands. Thermolysis of an in situ generated intermediate, obtained from the reaction of [Cp*CoCl]2 (Cp* = C5Me5) and [LiBH4·thf], with three equivalents of [Mo(CO)3(CH3CN)3] followed by the reaction with methyl iodide yielded isocloso-[(Cp*Co)3B6H7Co(CO)2] (1) and closo-[(Cp*Co)2B2H5Mo2(CO)6I] (2). Cluster 1 is ascribed to the isocloso structure based on a 10-vertex bicapped square antiprism geometry.

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The synthesis, structural characterization, and reactivity of new bridged borylene complexes are reported. The reaction of [{Cp*CoCl}2] with LiBH4·THF at -70 °C, followed by treatment with [M(CO)3(MeCN)3] (M=W, Mo, and Cr) under mild conditions, yielded heteronuclear triply bridged borylene complexes, [(μ3-BH)(Cp*Co)2(μ-CO)M(CO)5] (1-3; 1: M=W, 2: M=Mo, 3: M=Cr). During the syntheses of complexes 1-3, capped-octahedral cluster [(Cp*Co)2(μ-H)(BH)4{Co(CO)2}] (4) was also isolated in good yield.

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Synthetic sialic acid analogues with multiple modifications at different positions(C-1/C-2/C-4/C-8/C-9) are investigated by molecular mechanics and molecular dynamics to determine their conformational preferences and structural stability to interact with their natural receptors. Sialic acids with multiple modifications are soaked in a periodic box of water as solvent. Molecular mechanics and a 2 nanosecond molecular dynamics are done using amber force fields with 30 picosecond equilibrium.

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Molecular mechanics and molecular dynamics studies are performed to investigate the conformational preference of cell surface higher gangliosides (GT1A and GT1B) and their interaction with Cholera Toxin. The water mediated hydrogen bonding network exists between sugar residues in gangliosides. An integrated molecular modeling, molecular mechanics, and molecular dynamics calculation of cholera toxin complexed with GT1A and GT1B reveal that, the active site of cholera toxin can accommodate these higher gangliosides.

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Molecular mechanics and molecular dynamics studies are performed to investigate the conformational preference of cell surface monosialogangliosides (GM3, GM2 and GM1) in aqueous environment. Water mediated hydrogen bonding network plays a significant role in the structural stabilization of GM3, GM2 and GM1. The spatial flexibility of NeuNAc of gangliosides at the binding site of cholera toxin reveals a limited allowed eulerian space of 2.

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