Statistical analysis of the association between El Niño and the biological carbon pump in the East Sea (Japan Sea).

Understanding the impacts of climate change on oceanic carbon cycling is important from a carbon sequestration perspective. A sediment trap study focused on the biological carbon pump system in the Ulleung Basin (UB) in the southwestern part of the East Sea (Japan Sea) was conducted from 2011 to 2017. Particulate organic carbon (POC) flux significantly increased by 37, 56, and 43% from 2014 to 2016 during the El Niño phase.

vSPACE: exploring virtual spatial representation of articular chondrocytes at the single-cell level.

Summary: vSPACE is a web-based application presenting a spatial representation of scRNAseq data obtained from human articular cartilage by emulating the concept of spatial transcriptomics technology, but virtually. This virtual 2D plot presentation of human articular cartage cells generates several zonal distribution patterns, for one or multiple genes at a time, revealing patterns that scientists can appreciate as imputed spatial distribution patterns along the zonal axis.

Availability And Implementation: vSPACE is implemented in Python Dash as a web-based toolbox designed for data visualization of zonal gene expression patterns in articular cartilage chondrocytes.

Overexpression of heat shock protein 47 is associated with increased proliferation and metastasis in gastric cancer.

Here, we investigated that the heat shock protein 47 (HSP47) plays a crucial role in the progression of gastric cancer (GC). We analyzed HSP47 gene expression in GC cell lines and patient tissues. The HSP47 mRNA and protein expression levels were significantly higher in GC cell lines and tumor tissues compared to normal gastric mucosa.

vSPACE: Exploring Virtual Spatial Representation of Articular Chondrocytes at the Single-Cell Level.

Single cell RNA sequencing technology has been dramatically changing how gene expression studies are performed. However, its use has been limited to identifying subtypes of cells by comparing cells' gene expression levels in an unbiased manner to produce a 2D plot (e.g.

Solar-driven surface-heating membrane distillation using TiCT MXene-coated spacers.

The emergence of two-dimensional (2D) MXenes as efficient light-to-heat conversion materials offers significant potential for solar-based desalination, particularly in photothermal interfacial evaporation, enabling cost-effective solar-powered membrane distillation (MD). This study investigates solar-powered MD afforded by a photothermally functionalized spacer, which is built by spray-coating TiCT MXene sheets on metallic spacers. 2D TiCT MXene gives an ultrahigh photothermal conversion efficiency; thereby, by TiCT MXene-coated metallic spacer, this rationally designed spacer allows for a localized photothermal conversion and interfacial feed heating effect on the membrane surface, especially for MD operation.

Electrothermal interfacial evaporation through carbon-nanostructured composite membranes.

High energy demand required in membrane distillation (MD) process to heat feed water and maintain the necessary temperature gradient across the membrane presents a challenge to widespread adoption of MD. In response to this challenge, surface heating membrane distillation (SHMD) has emerged as a promising solution. SHMD can employ solar or electrical energy to directly heat the membrane and feed, eliminating the need for an external heat source to heat feed water.

CGCom: a framework for inferring Cell-cell Communication based on Graph Neural Network.

Cell-cell communication is crucial in maintaining cellular homeostasis, cell survival and various regulatory relationships among interacting cells. Thanks to recent advances of spatial transcriptomics technologies, we can now explore if and how cells' proximal information available from spatial transcriptomics datasets can be used to infer cell-cell communication. Here we present a cell-cell communication inference framework, called CGCom, which uses a graph neural network (GNN) to learn communication patterns among interacting cells by combining single-cell spatial transcriptomic datasets with publicly available ligand-receptor information and the molecular regulatory information down-stream of the ligand-receptor signaling.

Photothermal Surface Heating Membrane Distillation Using 3D-Printed TiCT MXene-Based Nanocomposite Spacers.

To address the growing global need for freshwater, it has become essential to use nonpotable saline water. Solar membrane distillation is a potential desalination method that does not need conventional electricity and may cut water production costs. In this study, we develop a photothermal surface heating membrane distillation using a new class of photothermal spacers constructed with TiCT MXene-based nanocomposites.

Multi-Sensor Data Fusion with a Reconfigurable Module and Its Application to Unmanned Storage Boxes.

We present a multi-sensor data fusion model based on a reconfigurable module (RM) with three fusion layers. In the data layer, raw data are refined with respect to the sensor characteristics and then converted into logical values. In the feature layer, a fusion tree is configured, and the values of the intermediate nodes are calculated by applying predefined logical operations, which are adjustable.

Porous TiCT MXene Membranes for Highly Efficient Salinity Gradient Energy Harvesting.

Extracting osmotic energy through nanoporous membranes is an efficient way to harvest renewable and sustainable energy using the salinity gradient between seawater and river water. Despite recent advances of nanopore-based membranes, which have revitalized the prospect of blue energy, their energy conversion is hampered by nanomembrane issues such as high internal resistance or low selectivity. Herein, we report a lamellar-structured membrane made of nanoporous TiCT MXene sheets, exhibiting simultaneous enhancement in permeability and ion selectivity beyond their inherent trade-off.

Predicting the targets of IRF8 and NFATc1 during osteoclast differentiation using the machine learning method framework cTAP.

Background: Interferon regulatory factor-8 (IRF8) and nuclear factor-activated T cells c1 (NFATc1) are two transcription factors that have an important role in osteoclast differentiation. Thanks to ChIP-seq technology, scientists can now estimate potential genome-wide target genes of IRF8 and NFATc1. However, finding target genes that are consistently up-regulated or down-regulated across different studies is hard because it requires analysis of a large number of high-throughput expression studies from a comparable context.

Muscle Fatigue Sensor Based on Ti C T MXene Hydrogel.

MXene-based hydrogels have received significant attention due to several promising properties that distinguish them from conventional hydrogels. In this study, it is shown that both strain and pH level can be exploited to tune the electronic and ionic transport in MXene-based hydrogel (M-hydrogel), which consists of MXene (Ti C T )-polyacrylic acid/polyvinyl alcohol hydrogel. In particular, the strain applied to the M-hydrogel changes MXene sheet orientation which leads to modulation of ionic transport within the M-hydrogel, due to strain-induced orientation of the surface charge-guided ionic pathway.

rPAC: Route based pathway analysis for cohorts of gene expression data sets.

Pathway analysis is a popular method aiming to derive biological interpretation from high-throughput gene expression studies. However, existing methods focus mostly on identifying which pathway or pathways could have been perturbed, given differential gene expression patterns. In this paper, we present a novel pathway analysis framework, namely rPAC, which decomposes each signaling pathway route into two parts, the upstream portion of a transcription factor (TF) block and the downstream portion from the TF block and generates a pathway route perturbation analysis scheme examining disturbance scores assigned to both parts together.

Designing a next generation solar crystallizer for real seawater brine treatment with zero liquid discharge.

Proper disposal of industrial brine has been a critical environmental challenge. Zero liquid discharge (ZLD) brine treatment holds great promise to the brine disposal, but its application is limited by the intensive energy consumption of its crystallization process. Here we propose a new strategy that employs an advanced solar crystallizer coupled with a salt crystallization inhibitor to eliminate highly concentrated waste brine.

Skeletal screening IMPC/KOMP using μCT and computer automated cryohistology: Application to the Efna4 KO mouse line.

The IMPC/KOMP program provides the opportunity to screen mice harboring well defined gene-inactivation mutations in a uniform genetic background. The program performs a global tissue phenotyping survey that includes skeletal x-rays and bone density measurements. Because of the relative insensitivity of the two screening tests for detecting variance in bone architecture, we initiated a secondary screen based on μCT and a cryohistolomorphological workflow that was performed on the femur and vertebral compartments on 220 randomly selected knockouts (KOs) and 36 control bone samples over a 2 1/2 year collection period provided by one of the production/phenotyping centers.

Cryptotanshinone chemosensitivity potentiation by TW-37 in human oral cancer cell lines by targeting STAT3-Mcl-1 signaling.

Background: Despite being one of the leading cancer types in the world, the diagnosis of oral cancer and its suitable therapeutic options remain limited. This study aims to investigate the single and chemosensitizing effects of TW-37, a BH3 mimetic in oral cancer, on human oral cancer cell lines.

Methods: We assessed the single and chemosensitizing effects of TW-37 in vitro using trypan blue exclusion assay, Western blotting, DAPI staining, Annexin V-FITC/PI double staining, and quantitative real-time PCR.

Photothermoelectric Response of TiCT MXene Confined Ion Channels.

With recent growing interest in biomimetic smart nanochannels, a biological sensory transduction in response to external stimuli has been of particular interest in the development of biomimetic nanofluidic systems. Here we demonstrate the MXene-based subnanometer ion channels that convert external temperature changes to electric signals preferential diffusion of cations under a thermal gradient. In particular, coupled with a photothermal conversion feature of MXenes, an array of the nanoconfined TiCT ion channels can capture trans-nanochannel diffusion potentials under a light-driven axial temperature gradient.

Two-Dimensional TiCT MXene Membranes as Nanofluidic Osmotic Power Generators.

Salinity-gradient is emerging as one of the promising renewable energy sources but its energy conversion is severely limited by unsatisfactory performance of available semipermeable membranes. Recently, nanoconfined channels, as osmotic conduits, have shown superior energy conversion performance to conventional technologies. Here, ion selective nanochannels in lamellar TiCT MXene membranes are reported for efficient osmotic power harvesting.

Astaxanthin attenuates the increase in mitochondrial respiration during the activation of hepatic stellate cells.

Upon liver injury, quiescent hepatic stellate cells (qHSCs) transdifferentiate to myofibroblast-like activated HSCs (aHSCs), which are primarily responsible for the accumulation of extracellular matrix proteins during the development of liver fibrosis. Therefore, aHSCs may exhibit different energy metabolism from that of qHSCs to meet their high energy demand. We previously demonstrated that astaxanthin (ASTX), a xanthophyll carotenoid, prevents the activation of HSCs.

Simultaneous production of fresh water and electricity via multistage solar photovoltaic membrane distillation.

The energy shortage and clean water scarcity are two key challenges for global sustainable development. Near half of the total global water withdrawals is consumed by power generation plants while water desalination consumes lots of electricity. Here, we demonstrate a photovoltaics-membrane distillation (PV-MD) device that can stably produce clean water (>1.

BioTarget: A Computational Framework Identifying Cancer Type Specific Transcriptional Targets of Immune Response Pathways.

Transcriptome data can provide information on signaling pathways active in cancers, but new computational tools are needed to more accurately quantify pathway activity and identify tissue-specific pathway features. We developed a computational method called "BioTarget" that incorporates ChIP-seq data into cellular pathway analysis. This tool relates the expression of transcription factor TF target genes (based on ChIP-seq data) with the status of upstream signaling components for an accurate quantification of pathway activity.

Synthesis of Tungsten Carbide Nanomaterials in Triple DC Thermal Plasma Jet System.

The tungsten carbide nanomaterials were synthesized in the triple DC thermal plasma jet system using refractory tungsten, and carbon sources such as multi wall carbon nanotube (MWCNT), amorphous carbon and methane. The starting materials were evaporated in the high temperature region of triple plasma jet, then condensed particles were prepared in nanoscale under 100 nm. The effect of carbon sources was investigated on a view of crystal phase structure and morphology.

Synthesis of Metal Boride Nanoparticles Using Triple Thermal Plasma Jet System.

Titanium, nickel, and tungsten boride nanoparticles were synthesized in the triple thermal plasma jet system. The coalesced high-enthalpy thermal plasma jet not only generates extensive high temperature regions but also allows the starting materials to penetrate into the center of high temperature regions effectively. The synthesis process of metal boride was investigated according to the nucleation temperature of three metals and boron.

Solar Evaporator with Controlled Salt Precipitation for Zero Liquid Discharge Desalination.

A sustainable supply of clean water is essential for the development of modern society, which has become increasingly dependent on desalination technology since 96.5% of the water on Earth is salt water. Thousands of desalination plants are producing massive waste brine as byproduct, and the direct discharge of brine raises serious concerns about its ecological impact.