Publications by authors named "Senthilkumar K Muthusamy"

Article Synopsis
  • The study focuses on the pathogenic dikaryon phase of the fungus Tilletia indica Mitra, which causes Karnal bunt (KB) in wheat, by providing draft genomes of the dikaryon and its two monosporidial lines and conducting comparative genome analysis.
  • Researchers performed transcriptome analyses on infected wheat grains at various time intervals after inoculation to identify genes involved in both the disease-causing dikaryon and the wheat’s response to infection.
  • Findings from this study are compiled in the TiGeR web resource, offering valuable genomic data and insights that could aid in managing Karnal bunt in wheat and in developing resistant wheat strains.
View Article and Find Full Text PDF
Article Synopsis
  • * Phylogenetic studies categorized the identified MeHsp70 proteins into eight distinct groups and promoter analysis highlighted their tissue-specific functions and responses to light and stress.
  • * Meta-analysis revealed varied expression patterns of these genes under different stress conditions, with some showing consistent expression while others were specifically responsive to drought and cold stress, along with predictions of regulation by miRNAs.
View Article and Find Full Text PDF
Article Synopsis
  • Nitrogen (N) is a crucial nutrient for plant growth and is the most commonly used fertilizer in agriculture, but only about 50% of applied N is effectively used by crops.
  • Excess nitrogen is lost through processes like volatilization, runoff, leaching, and denitrification, which harms the environment and reduces farmers' returns.
  • Improving Nitrogen Use Efficiency (NUE) through better management practices and technological advancements is essential for reducing environmental impacts and meeting agricultural demands sustainably.
View Article and Find Full Text PDF
Article Synopsis
  • BREVIS RADIX (BRX) is a specific gene family in plants that plays a crucial role in regulating root growth and tiller angle, which are important for improving crops.
  • The study identified five BRX family genes in wheat, revealing their evolutionary conservation and different levels of expression in various tissues, with TaBRXL1 being the most abundantly expressed.
  • The expression patterns of these genes in response to biotic and abiotic stresses suggest they have distinct yet overlapping functions, supported by their protein interactions and a global co-expression network.
View Article and Find Full Text PDF
Article Synopsis
  • Maintenance of growth is crucial for sustaining crop yields under stress, making the identification of genes related to cell division and growth essential, especially under abiotic stress conditions.* -
  • The study identified two Ran GTPase genes, TaRAN1 and TaRAN2, in wheat, which play roles in nucleocytoplasmic transport and are involved in growth during various developmental stages and stress responses.* -
  • Expression analysis revealed that TaRAN1 has a more consistent expression across different conditions, while TaRAN2 exhibits stress-specific responses; both genes respond differently to drought, cold, and salt stress.*
View Article and Find Full Text PDF

Salt stress adversely affects the global wheat production and productivity. To improve salinity tolerance of crops, identification of robust molecular markers is highly imperative for development of salt-tolerant cultivars to mimic yield losses under saline conditions. In this study, we mined 171 salt-responsive genes (including 10 miRNAs) from bread wheat genome using the sequence information of functionally validated salt-responsive rice genes.

View Article and Find Full Text PDF

Being a major staple food crop of the world, wheat provides nutritional food security to the global populations. Heat stress is a major abiotic stress that adversely affects wheat production throughout the world including Indo-Gangatic Plains (IGP) where four wheat growing countries viz., India, Bangladesh, Nepal and Pakistan produce 42% of the total wheat production.

View Article and Find Full Text PDF

Imparting cold stress tolerance to crops is a major challenge in subtropical agriculture. New genes conferring cold tolerance needs to be identified and characterised for sustainable crop production in low-temperature stress affected areas. Here we report functional characterisation of OsRBGD3, classified previously as a class D glycine-rich RNA recognition motif (RRM) containing proteins from a drought-tolerant Indica rice cultivar N22.

View Article and Find Full Text PDF
Article Synopsis
  • Photosynthetic fixation of CO is more efficient in C4 plants compared to C3 plants, and rice, being a C3 plant, is a candidate for genetic engineering to adopt C4 traits.
  • This study identified 15 C4-related genes in the rice genome through comparison with known maize genes and found that these genes are conserved across various grass species.
  • The analysis of gene expression in different rice genotypes and conditions indicated that these C4 genes respond to stress and hormone treatments, suggesting their potential for enhancing rice resilience through CRISPR-based modifications.
View Article and Find Full Text PDF

Abscisic acid (ABA) plays an important role in plant development and adaptation to abiotic stresses. The pyrabactin resistance-like (PYL) gene family has been characterized as intracellular ABA receptors in Arabidopsis. We describe here the functional characterization of PYL3 ABA receptor from a drought-tolerant rice landrace Nagina 22 (N22).

View Article and Find Full Text PDF
Article Synopsis
  • Small Heat Shock Proteins (sHSPs)/HSP20 help plants withstand abiotic stresses, particularly heat stress, which poses a significant threat to wheat productivity due to climate change.
  • Researchers identified 163 TaHSP20 genes in wheat by analyzing related sequences from rice and Arabidopsis and categorized them based on sub-cellular location and genetic relationships with other grass species.
  • The expression patterns of these genes were explored, revealing their activation under various stresses, with specific genes showing high expression in response to salt and heat, indicating their potential role in enhancing wheat's stress tolerance.
View Article and Find Full Text PDF

Karnal bunt disease caused by the fungus Tilletia indica Mitra is a serious concern due to strict quarantines affecting international trade of wheat. We announce here the first draft assembly of two monosporidial lines, PSWKBGH-1 and -2, of this fungus, having approximate sizes of 37.46 and 37.

View Article and Find Full Text PDF

A sub-group of class I Caseinolytic proteases (Clps) function as molecular chaperone and confer thermotolerance to plants. We identified class I Clp family consisting of five ClpB/HSP100, two ClpC, and two ClpD genes from bread wheat. Phylogenetic analysis showed that these genes were highly conserved across grass genomes.

View Article and Find Full Text PDF

Small non-coding RNAs (sRNAs) namely microRNAs (miRNAs) and trans-acting small interfering RNAs (tasi-RNAs) play a crucial role in post-transcriptional regulation of gene expression and thus the control plant development and stress responses. In order to identify drought-responsive miRNAs and tasi-RNAs in sorghum, we constructed small RNA libraries from a drought tolerant (M35-1) and susceptible (C43) sorghum genotypes grown under control and drought stress conditions, and sequenced by Illumina Genome Analyzer IIx. Ninety seven conserved and 526 novel miRNAs representing 472 unique miRNA families were identified from sorghum.

View Article and Find Full Text PDF