Establishing African genomics and bioinformatics programs through annual regional workshops.

The African BioGenome Project (AfricaBP) Open Institute for Genomics and Bioinformatics aims to overcome barriers to capacity building through its distributed African regional workshops and prioritizes the exchange of grassroots knowledge and innovation in biodiversity genomics and bioinformatics. In 2023, we implemented 28 workshops on biodiversity genomics and bioinformatics, covering 11 African countries across the 5 African geographical regions. These regional workshops trained 408 African scientists in hands-on molecular biology, genomics and bioinformatics techniques as well as the ethical, legal and social issues associated with acquiring genetic resources.

Lactation traits and reproductive performances of Sahraoui female camel in two breeding systems at Algerian Sahara.

The main objective of this study is to determine the impact of the camel livestock system on individual and herd performances of milk production, lactation curve, fats, and protein concentrations. For this purpose, 13 she-camels of Sahraoui breed from the south eastern Algeria and belonging and semi-intensive system (N = 6) and intensive system (N = 7) were studied. Recording and sampling of milk were carried out at regular intervals during a full lactation.

Biochemical and genotyping analyses of camels (Camelus dromedaries) trypanosomiasis in North Africa.

Camels are considered an important food source in North Africa. Trypanosomiasis in camels is a life-threatening disease that causes severe economic losses in milk and meat production. Therefore, the objective of this study was to determine the trypanosome genotypes in the North African region.

Accuracy of image analysis for linear zoometric measurements in dromedary camels.

The present study was designed to verify the effectiveness of the image analysis method for body measurement in dromedary camel compared to manual measurements as a reference method. To achieve this aim, twenty-one linear body measurements were estimated on 59 adult Sahraoui dromedary camels (22 males and 37 females) with a normal clinical condition by using a measuring stick or vernier caliper (standard method). On the other hand, image analysis on profile, front, or behind photographs was processed using Axiovision Software.

Maternal origin and genetic diversity of Algerian domestic chicken () from North-Western Africa based on mitochondrial DNA analysis.

Local chicken populations are a major source of food in the rural areas of Algeria. However, their origin has not been well characterized. The objectives of this study were to assess genetic diversity and maternal origin of domestic chicken from five agro-ecological regions of western Algeria: coastal (CT), inland plains (IP), highlands (HL), mountains (MT) and sahara (SH, including Oasis, Req and Erg regions).

The maternal origin of indigenous domestic chicken from the Middle East, the north and the horn of Africa.

Background: Indigenous domestic chicken represents a major source of protein for agricultural communities around the world. In the Middle East and Africa, they are adapted to hot dry and semi-dry areas, in contrast to their wild ancestor, the Red junglefowl, which lives in humid and sub-humid tropical areas. Indigenous populations are declining following increased demand for poultry meat and eggs, favouring the more productive exotic commercial breeds.

Inference of Breed Structure in Farm Animals: Empirical Comparison between SNP and Microsatellite Performance.

Knowledge of population structure is essential to improve the management and conservation of farm animal genetic resources. Microsatellites, which have long been popular for this type of analysis, are more and more neglected in favor of whole-genome single nucleotide polymorphism (SNP) chips that are now available for the main farmed animal species. In this study, we compared genetic patterns derived from microsatellites to that inferred by SNPs, considering three pairs of datasets of sheep and cattle.

Genetic homogenization of indigenous sheep breeds in Northwest Africa.

Northwest-African sheep represent an ideal case-study for assessing the potential impact of genetic homogenization as a threat to the future of traditional breeds that are adapted to local conditions. We studied ten Algerian and Moroccan breeds of sheep, including three transboundary breeds, distributed over a large part of the Maghreb region, which represents a geographically and historically coherent unit. Our analysis of the dataset that involved carrying out Genome-wide SNP genotyping, revealed a high level of homogenization (ADMIXTURE, NetView, fineSTRUCTURE and IBD segments analyses), in such a way that some breeds from different origins appeared genetically undistinguished: by grouping the eight most admixed populations, we obtained a mean global F value of 0.

Prion Disease in Dromedary Camels, Algeria.

Prions cause fatal and transmissible neurodegenerative diseases, including Creutzfeldt-Jakob disease in humans, scrapie in small ruminants, and bovine spongiform encephalopathy (BSE). After the BSE epidemic, and the associated human infections, began in 1996 in the United Kingdom, general concerns have been raised about animal prions. We detected a prion disease in dromedary camels (Camelus dromedarius) in Algeria.