Publications by authors named "Selvakumar Kamatchinathan"
Article Synopsis
- The PRIDE database is a premier repository for mass spectrometry-based proteomics data and plays a key role in the ProteomeXchange consortium, facilitating research sharing.
- Over the past three years, PRIDE has made significant advancements, including a new file transfer protocol and an automatic dataset validation process, resulting in approximately 534 datasets submitted monthly.
- Recent innovations include the introduction of a PRIDE chatbot for user support and enhanced efforts to integrate high-quality data with resources like UniProt and Ensembl.
We here present a chatbot assistant infrastructure (https://www.ebi.ac.
View Article and Find Full Text PDFMass spectrometry (MS) is by far the most used experimental approach in high-throughput proteomics. The ProteomeXchange (PX) consortium of proteomics resources (http://www.proteomexchange.
View Article and Find Full Text PDFThe PRoteomics IDEntifications (PRIDE) database (https://www.ebi.ac.
View Article and Find Full Text PDFThe amount of public proteomics data is rapidly increasing but there is no standardized format to describe the sample metadata and their relationship with the dataset files in a way that fully supports their understanding or reanalysis. Here we propose to develop the transcriptomics data format MAGE-TAB into a standard representation for proteomics sample metadata. We implement MAGE-TAB-Proteomics in a crowdsourcing project to manually curate over 200 public datasets.
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