Metabolic Exploration for Cyhalofop-Butyl Antagonism in Barnyardgrass [ (L.) P. Beauv.] Following Pretreatment of Malathion.

The present study investigated the effects of broad-spectrum metabolic inhibitors malathion (cytochrome P450 inhibitor) and/or 4-chloro-7-nitrobenzofurazan (NBD-Cl; glutathione -transferase inhibitor) on the metabolism of cyhalofop-butyl (CyB) in barnyardgrass [ (L.) P. Beauv.

Exploratory Analysis on Herbicide Metabolism and Very-Long-Chain Fatty Acid Production in Metolachlor-Resistant Palmer Amaranth ( S. Wats.).

A Palmer amaranth ( S. Wats.) biotype resistant to -metolachlor was confirmed from crop fields in Arkansas, USA.

Detection of subgenome bias using an anchored syntenic approach in Eleusine coracana (finger millet).

Background: Finger millet (Eleusine coracana 2n = 4x = 36) is a hardy, nutraceutical, climate change tolerant, orphan crop that is consumed throughout eastern Africa and India. Its genome has been sequenced multiple times, but A and B subgenomes could not be separated because no published genome for E. indica existed.

with Reported Resistance to Glyphosate Conferred by Aldo-Keto Reductase Also Contains a Pro-106-Thr EPSPS Target Site Mutation.

Echinochloa with resistance to glyphosate also contains an unreported Pro-106-Thr EPSPS target-site mutation.

A novel mutation A212T in chloroplast Protoporphyrinogen oxidase (PPO1) confers resistance to PPO inhibitor Oxadiazon in Eleusine indica.

Background: Protoporphyrinogen oxidase (PPO) with two isoforms, chloroplast-targeted (PPO1) and mitochondrial-targeted (PPO2), catalyzes a step in the biosynthesis of chlorophyll and heme. PPO1 and PPO2 are herbicide target sites of PPO-inhibiting herbicides. Target-site mutations conferring resistance to PPO inhibitors have all thus far been in PPO2.

Transcriptome Analysis Reveals Unique Relationships Among Species and Heritage of .

Relationships in the genus were obtained through transcriptome analysis. ( ssp. ), also known as finger millet, is an allotetraploid minor crop primarily grown in East Africa and India.

Rapid identification of a candidate nicosulfuron sensitivity gene (Nss) in maize (Zea mays L.) via combining bulked segregant analysis and RNA-seq.

A candidate nicosulfuron sensitivity gene Nss was identified by combining bulked segregant analysis and RNA-seq. Multiple mutations of this gene were discovered in nicosulfuron-sensitive maize compared with the tolerant. It has been demonstrated that variabilities exist in maize response to nicosulfuron.

The power and potential of genomics in weed biology and management.

There have been previous calls for, and efforts focused on, realizing the power and potential of weed genomics for better understanding of weeds. Sustained advances in genome sequencing and assembly technologies now make it possible for individual research groups to generate reference genomes for multiple weed species at reasonable costs. Here, we present the outcomes from several meetings, discussions, and workshops focused on establishing an International Weed Genomics Consortium (IWGC) for a coordinated international effort in weed genomics.

Complete plastid genome sequence of goosegrass (Eleusine indica) and comparison with other Poaceae.

Eleusine indica, also known as goosegrass, is a serious weed in at least 42 countries. In this paper we report the complete plastid genome sequence of goosegrass obtained by de novo assembly of paired-end and mate-paired reads generated by Illumina sequencing of total genomic DNA. The goosegrass plastome is a circular molecule of 135,151bp in length, consisting of two single-copy regions separated by a pair of inverted repeats (IRs) of 20,919 bases.

Transcriptome Assembly and Comparison of an Allotetraploid Weed Species, Annual Bluegrass, with its Two Diploid Progenitor Species, Schrad and Kunth.

Annual bluegrass ( L.) is one of the most widespread weed species in this world. As a young allotetraploid, has occupied diverse environments from Antarctic area to subtropical regions.

Resistance to aryloxyphenoxypropionate herbicides in Amazon sprangletop: Confirmation, control, and molecular basis of resistance.

Amazon sprangletop is problematic weed of rice in the midsouthern USA. Two biotypes of this species from rice fields approximately 100km apart in Louisiana were unaffected when sprayed with the labeled field rate of cyhalofop-butyl (314g ai ha) in 2008. Dose response studies were conducted to confirm the level of resistance to cyhalofop-butyl over a range of doses.

Optimizing Transcriptome Assemblies for Eleusine indica Leaf and Seedling by Combining Multiple Assemblies from Three De Novo Assemblers.

Due to rapid advances in sequencing technology, increasing amounts of genomic and transcriptomic data are available for plant species, presenting enormous challenges for biocomputing analysis. A crucial first step for a successful transcriptomics-based study is the building of a high-quality assembly. Here, we utilized three different de novo assemblers (Trinity, Velvet, and CLC) and the EvidentialGene pipeline tr2aacds to assemble two optimized transcript sets for the notorious weed species, Eleusine indica.

Effects of elevated CO2 on biomass and fungi associated with two ecotypes of ragweed (Ambrosia artemisiifolia L.).

Herbicide resistant weed populations have developed due to the repeated application of herbicides. Elevated concentrations of atmospheric CO2 can have positive effects on weed growth, but how rising CO2 might affect herbicide resistant weeds is not known. Ragweed (Ambrosia artemisiifolia L.

First report of resistance to acetolactate-synthase-inhibiting herbicides in yellow nutsedge (Cyperus esculentus): confirmation and characterization.

Background: Yellow nutsedge is one of the most problematic sedges in Arkansas rice, requiring the frequent use of halosulfuron (sulfonylurea) for its control. In the summer of 2012, halosulfuron at 53 g ha(-1) (labeled field rate) failed to control yellow nutsedge. The level of resistance to halosulfuron was determined in the putative resistant biotype, and its cross-resistance to other acetolactate synthase (ALS) inhibitors from four different herbicide families.

Utilizing next-generation sequencing to study homeologous polymorphisms and herbicide-resistance-endowing mutations in Poa annua acetolactate synthase genes.

Background: Detection of single nucleotide polymorphisms (SNPs) related to herbicide resistance in non-model polyploid weed species is fraught with difficulty owing to the gene duplication and lack of reference sequences. Our research seeks to overcome these obstacles by Illumina HiSeq read mapping, SNP calling and allele frequency determinations. Our focus is on the acetolactate synthase (ALS) gene, the target site of ALS-inhibiting herbicides, in Poa annua, an allotetraploid weed species originating from two diploid parents, P.

Analysis of the Citrullus colocynthis transcriptome during water deficit stress.

Citrullus colocynthis is a very drought tolerant species, closely related to watermelon (C. lanatus var. lanatus), an economically important cucurbit crop.

Increase in nutritionally important sweet corn kernel carotenoids following Mesotrione and atrazine applications.

The herbicide mesotrione inhibits a critical enzyme, phytoene desaturase, in plant carotenoid biosynthesis. Mesotrione is currently labeled for selective weed control in sweet corn ( Zea mays var. rugosa).

Effects of mesotrione on perennial ryegrass (Lolium perenne L.) carotenoid concentrations under varying environmental conditions.

Mesotrione is a carotenoid biosynthesis inhibiting herbicide, which is being evaluated for use in turfgrass. Carotenoids are important light harvesting and photoprotecting pigments that dissipate and quench excess light energy. The effects of mesotrione on carotenoid concentrations in turf and weed species, such as perennial ryegrass (Lolium perenne L.

Influence of nitrogen and sulfur on biomass production and carotenoid and glucosinolate concentrations in watercress (Nasturtium officinale R. Br.).

Watercress (Nasturtium officinale R. Br.) is a perennial herb rich in the secondary metabolites of glucosinolates and carotenoids.