Publications by authors named "Schippers J"

Clinical monitoring of pulmonary edema due to vascular hyperpermeability in acute respiratory distress syndrome (ARDS) poses significant clinical challenges. Presently, no biological or radiological markers are available for quantifying pulmonary edema. Our aim was to phenotype pulmonary edema and pulmonary vascular permeability in patients with coronavirus disease 2019 (COVID-19) ARDS.

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  • Life evolved in a reducing environment but faced challenges from reactive oxygen species (ROS) during the great oxidation event (GOE), leading to the development of copper-zinc superoxide dismutases (CuZnSODs) in some plants.
  • The chemical inhibitor lung cancer screen 1 (LCS-1) was used to study the effects of CuZnSOD inhibition on plant growth, transcription, and metabolism across different species, including bryophytes and vascular plants.
  • The results showed that LCS-1 caused oxidative stress and a core physiological response related to glutathione balance in all species, but varying metabolic responses were observed based on the number and types of CuZnSOD isoforms present in each plant.
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Flooding impairs plant growth through oxygen deprivation, which activates plant survival and acclimation responses. Transcriptional responses to low oxygen are generally associated with the activation of group VII ETHYLENE-RESPONSE FACTOR (ERFVII) transcription factors. However, the exact mechanisms and molecular components by which ERFVII factors initiate gene expression are not fully elucidated.

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The Wilms' tumor protein 1 (WT1) is a well-known and prioritized tumor-associated antigen expressed in numerous solid and blood tumors. Its abundance and immunogenicity have led to the development of different WT1-specific immune therapies. The driving player in these therapies, the WT1-specific T-cell receptor (TCR) repertoire, has received much less attention.

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Truncating variants in TTN (TTNtv) are present in 15-25 % of patients with idiopathic dilated cardiomyopathy. Interestingly, the pathogenicity of TTNtv seems to be linked to their location within the gene. More proximal I-band TTNtv (TTNtvI) harbour less pathogenic potential than distant A-band TTNtv (TTNtvA).

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Cardiovascular outcome in Marfan syndrome (MFS) patients most prominently depends on aortic aneurysm progression with subsequent aortic dissection. Angiotensin II receptor blockers (ARBs) prevent aneurysm formation in MFS mouse models. In patients, ARBs only slow down aortic dilation.

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The role of T cell receptor (TCR) diversity in infectious disease susceptibility is not well understood. We use a systems immunology approach on three cohorts of herpes zoster (HZ) patients and controls to investigate whether TCR diversity against varicella-zoster virus (VZV) influences the risk of HZ. We show that CD4 T cell TCR diversity against VZV glycoprotein E (gE) and immediate early 63 protein (IE63) after 1-week culture is more restricted in HZ patients.

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  • * A study analyzed genetic data from UK Biobank patients with shingles, focusing on immune responses and risk factors, uncovering significant links between susceptibility and human leukocyte antigens (HLAs).
  • * Key findings indicate that variations in the major histocompatibility complex play a crucial role in developing shingles, alongside increased immune responses related to type I interferon, offering new insights into how VZV reactivation affects the immune system.
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Mucormycosis is a severe complication in critically ill COVID-19 patients. Throughout the pandemic, a notable prevalence of mucormycosis has been observed in the Indian population, whereas lower occurrences have been reported in Europe. However, limited data exist regarding its prevalence in Europe, which is potentially underestimated due to the low sensitivity of bronchoalveolar lavage (BAL) cultures.

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Background: Lung ultrasound (LUS) can detect pulmonary edema and it is under consideration to be added to updated acute respiratory distress syndrome (ARDS) criteria. However, it remains uncertain whether different LUS scores can be used to quantify pulmonary edema in patient with ARDS.

Objectives: This study examined the diagnostic accuracy of four LUS scores with the extravascular lung water index (EVLWi) assessed by transpulmonary thermodilution in patients with moderate-to-severe COVID-19 ARDS.

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  • - The study evaluated the effects of intravenous imatinib on patients with acute respiratory distress syndrome (ARDS) caused by COVID-19, focusing on its ability to reduce pulmonary edema.
  • - In a randomized trial involving 66 patients, results showed no significant difference in pulmonary edema reduction or clinical outcomes between imatinib and placebo groups, although imatinib was found to be safe.
  • - Interestingly, a subset of patients with high levels of specific inflammatory markers did benefit from imatinib treatment, indicating that targeted approaches may improve outcomes in certain ARDS patients.
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  • Researchers are using human induced pluripotent stem cell (hiPSC)-derived neural models to study the interactions between the Varicella-Zoster Virus (VZV) and the immune system in neurons.
  • A new study explored whether macrophages could help activate an antiviral response in VZV-infected hiPSC-neurons, but found the macrophages were ineffective in suppressing the infection.
  • RNA sequencing results showed a weak immune response in both infected neurons and co-cultured macrophages, indicating that other immune cells, like T-cells, may be necessary for a strong antiviral response against VZV.
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Background: Plant immunity relies on the perception of immunogenic signals by cell-surface and intracellular receptors and subsequent activation of defense responses like programmed cell death. Under certain circumstances, the fine-tuned innate immune system of plants results in the activation of autoimmune responses that cause constitutive defense responses and spontaneous cell death in the absence of pathogens.

Results: Here, we characterized the onset of leaf death 12 (old12) mutant that was identified in the Arabidopsis accession Landsberg erecta.

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This study aimed to calibrate and validate the MFI-UF method in order to ensure the accuracy of particulate fouling measurements in RO. Firstly, the MFI-UF calibration was examined using two solutions of standard particles (dextran and polystyrene). Two main criteria were investigated: (i) MFI-UF linearity with particle concentrations at both low and high ranges of fouling potential and (ii) the reproducibility of MFI-UF linearity.

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  • Genetic variation in regulatory sequences impacts transcription factor binding, influencing plant traits, particularly in the brassinosteroid growth hormone pathway.
  • Researchers employed a hybrid allele-specific chromatin binding sequencing technique (HASCh-seq) to reveal that ZmBZR1 targets thousands of genes in maize, with significant allele-specific binding observed.
  • The study highlights that both genetic and epigenetic factors contribute to variations in ZmBZR1 occupancy and links this variation to yield and disease-related traits, providing a new method for genomic analysis in plants.
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Endosperm development in barley starts with the formation of a multinucleate syncytium, followed by cellularization in the ventral part of the syncytium generating endosperm transfer cells (ETCs) as first differentiating subdomain, whereas aleurone (AL) cells will originate from the periphery of the enclosing syncytium. Positional signaling in the syncytial stage determines cell identity in the cereal endosperm. Here, we performed a morphological analysis and employed laser capture microdissection (LCM)-based RNA-seq of the ETC region and the peripheral syncytium at the onset of cellularization to dissect developmental and regulatory programs directing cell specification in the early endosperm.

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Aerobic reactions are essential to sustain plant growth and development. Impaired oxygen availability due to excessive water availability, e.g.

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  • The CounterCOVID study demonstrated that oral imatinib treatment resulted in improved clinical outcomes and reduced mortality in COVID-19 patients compared to a placebo, with notable elevated levels of alpha-1 acid glycoprotein (AAG) impacting drug concentrations.
  • This post-hoc analysis aimed to compare the drug exposure of imatinib in COVID-19 patients versus cancer patients, hypothesizing that higher drug exposure in severe COVID-19 cases would enhance treatment outcomes.
  • Results indicated that COVID-19 patients had significantly higher imatinib concentrations than cancer patients, with certain exposure parameters showing significant associations with clinical outcomes, thereby suggesting that higher drug levels could improve recovery metrics in COVID-19 patients.
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This study comprehensively investigates the quality of drinking water produced by novel advanced treatment encompassing 1 kDa hollow fiber nanofiltration (HFNF) - Biological Activated Carbon Filtration (BACF) from (reservoir) surface water, and compares this with drinking water after conventional 'CSF' pretreatment (coagulation - flocculation - sedimentation - media filtration - UV-disinfection) - BACF. The objective of HFNF - BACF treatment is to enhance the drinking water's quality in increased biological stability, reduced concentrations of organic micropollutants (OMP), and improvement in other chemical-physical parameters, whilst maintaining sufficient hardness to avoid subsequent remineralization. For this study a large suite of quality parameters was extensively monitored in pilot plants during nearly two years, enabling the incorporation of seasonal effects.

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Although previous studies support the clinical benefit of imatinib regarding respiratory status in hospitalized patients with COVID-19, potential cardiotoxicity may limit its clinical application. This study aimed to investigate the cardiac safety of imatinib in COVID-19. In the CounterCOVID study, 385 hospitalized hypoxemic patients with COVID-19 were randomly assigned to receive 10 days of oral imatinib or placebo in a 1:1 ratio.

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  • Imatinib was found to reduce 90-day mortality in hospitalized COVID-19 patients, but how it does so biologically is still unclear.
  • A study analyzed how changes in specific biological markers due to imatinib influenced mortality rates and recognized three different biological subphenotypes among patients.
  • The beneficial effects of imatinib were linked to changes in several biomarkers, particularly in patients with increased levels of surfactant protein D, indicating specific immune responses and endothelial dysfunction.
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Rapid population growth and urbanization are two main drivers for the over-abstraction of conventional freshwater resources in various parts of the world, which leads to the situation of water scarcity (per capita availability <1000 m3/year). Predictions based on the World Bank projected population data and the FAO AQUASTAT database for freshwater availability show that by 2050, 2 billion people living in 44 countries will likely suffer from water scarcity, of which 95% may live in developing countries. Among these, the countries that will likely be most strongly hit by water scarcity by 2050 are Uganda, Burundi, Nigeria, Somalia, Malawi, Eritrea, Ethiopia, Haiti, Tanzania, Niger, Zimbabwe, Afghanistan, Sudan, and Pakistan.

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The objectives of this study are to assess the performance of antiscalants in increasing the recovery (≥85%) of a reverse osmosis (RO) plant treating anaerobic groundwater (GW) in Kamerik (the Netherlands), and to identify scalants/foulant that may limit RO recovery. Five different commercially available antiscalants were compared on the basis of their manufacturer-recommended dose. Their ability to increase the recovery from 80% to a target of 85% was evaluated in pilot-scale measurements with anaerobic GW and in once-through lab-scale RO tests with synthetic (artificial) feedwater.

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