Publications by authors named "Sangbong Choi"

Plant growth must be regulated throughout the plant life cycle. The myeloblastosis (MYB) transcription factor (TF) family is one of the largest TF families and is involved in metabolism, lignin biosynthesis, and developmental processes. Here, we showed that OsMYB14, a rice R2R3-MYB TF, was expressed in leaves and roots, especially in rice culm and panicles, and that it localized to the nucleus.

View Article and Find Full Text PDF
Article Synopsis
  • The study, conducted by the Center for Personalized Precision Medicine of Tuberculosis (cPMTb), aims to create personalized treatment systems for tuberculosis (TB) and to compare patients with TB, non-tuberculosis mycobacterial infection (NTM), and latent TB infection (LTBI).
  • A total of 1,226 patients were analyzed, revealing that TB patients were generally older, had lower body mass index (BMI), and higher diabetes rates compared to those with LTBI, while patients with NTM had a higher female proportion and a history of TB.
  • The analysis of genetic traits showed similar distributions of N-acetyltransferase-2 (NAT2) and SLCO
View Article and Find Full Text PDF

Pathogen effectors target diverse subcellular organelles to manipulate the plant immune system. Although the nucleolus has emerged as a stress marker and several effectors are localized in the nucleolus, the roles of nucleolar-targeted effectors remain elusive. In this study, we showed that Phytophthora infestans infection of Nicotiana benthamiana results in nucleolar inflation during the transition from the biotrophic to the necrotrophic phase.

View Article and Find Full Text PDF

Non-tuberculous mycobacterial lung disease (NTM-LD) is most commonly due to species within the complex (MAC) and complex (MAbC). Surgical lung resection, typically a lobectomy or segmentectomy, is occasionally undertaken for individuals with recalcitrant but localized NTM-LD. Since the growth characteristics of MAC (slow growers) and MAbC (rapid growers) as well as their drug susceptibility patterns are significantly different, the objective of this study is to characterize and compare the histopathologic features of the resected lungs due to these two major NTM groups.

View Article and Find Full Text PDF

Background: Patients with intermediate-risk pulmonary embolism (PE) can be treated with anticoagulation monotherapy. However, clinicians are concerned as to whether anticoagulation monotherapy is sufficient to reduce mortality in patients with a large embolic burden, and to resolve vascular obstruction. We investigated whether anticoagulation monotherapy was appropriate in patients with intermediate risk PE in terms of the occurrence of residual pulmonary vascular obstruction (RPVO), and the factors that independently predict the occurrence of RPVO.

View Article and Find Full Text PDF

The dysregulation of glycolysis regardless of oxygen availability is one of the major characteristics of cancer cells. While the drug resistance of ovarian cancer cells has been extensively studied, the molecular mechanism of anticancer drug resistance under low-glucose conditions remains unknown. In this study, we investigated the pathway mediating drug resistance under low-glucose conditions by examining the relationship between embryonic lethal abnormal vision Drosophila homolog-like (ELAVL) protein and glycolysis-related enzymes.

View Article and Find Full Text PDF

The abnormal expression of tropomyosin receptor kinase (Trk) serves an important role in the promotion of cancer progression. Homeobox C6 (HOXC6) and A disintegrin and metalloproteinase domain‑containing 8 (ADAM8) are associated with the invasiveness of cancer cells. However, the exact relationship between these molecules and their downstream signaling pathways in chemoresistant colon cancer cells are largely unknown.

View Article and Find Full Text PDF

Background: Pumilio RNA-binding proteins are evolutionarily conserved throughout eukaryotes and are involved in RNA decay, transport, and translation repression in the cytoplasm. Although a majority of Pumilio proteins function in the cytoplasm, two nucleolar forms have been reported to have a function in rRNA processing in Arabidopsis. The species of the genus Chara have been known to be most closely related to land plants, as they share several characteristics with modern Embryophyta.

View Article and Find Full Text PDF

PTR2 in Arabidopsis thaliana is negatively regulated by ABI4 and plays a key role in water uptake by seeds, ensuring that imbibed seeds proceed to germination. Peptide transporters (PTRs) transport nitrogen-containing substrates in a proton-dependent manner. Among the six PTRs in Arabidopsis thaliana, the physiological role of the tonoplast-localized, seed embryo abundant PTR2 is unknown.

View Article and Find Full Text PDF

The current qualitative study explored perceptions and experiences of chronic obstructive pulmonary disease (COPD) among Korean male older adults. Six older adults participated in a narrative group interview. Responses were analyzed to describe perceptions and experiences of COPD.

View Article and Find Full Text PDF

This study investigated the differences in airway mechanics and postoperative respiratory complications using two mechanical ventilation modalities and the relationship between biomarkers and postoperative respiratory complications in patients with colorectal cancer who underwent laparoscopic colectomy. Forty-six patients with colorectal cancer scheduled for laparoscopic colectomy were randomly allocated to receive mechanical ventilation using either volume-controlled ventilation (VCV) (n = 23) or pressure-controlled ventilation (PCV) (n = 23). Respiratory parameters were measured and plasma sRAGE and S100A12 were collected 20 minutes after the induction of anesthesia in the supine position without pneumoperitoneum (T1), 40 minutes after 30° Trendelenburg position with pneumoperitoneum (T2), at skin closure in the supine position (T3), and 24 hours after the operation (T4).

View Article and Find Full Text PDF

Pumilio RNA-binding proteins are largely involved in mRNA degradation and translation repression. However, a few evolutionarily divergent Pumilios are also responsible for proper pre-rRNA processing in human and yeast. Here, we describe an essential Arabidopsis nucleolar Pumilio, APUM24, that is expressed in tissues undergoing rapid proliferation and cell division.

View Article and Find Full Text PDF
Article Synopsis
  • * Researchers performed whole-genome resequencing of 17 radish accessions (10 cultivated and 7 wild) and found 4 million high-quality SNPs, revealing that Asian cultivated radishes are closely related to their wild counterparts, highlighting unique domestication pathways compared to European/American radishes.
  • * The analysis identified 153 candidate domestication regions with genes linked to root development, signaling pathways, and metabolism, suggesting that traits like a main taproot and better taste resulted from selective breeding in radishes
View Article and Find Full Text PDF
Article Synopsis
  • This study presents the first chromosome-scale draft genome sequence of radish, revealing it is organized into nine chromosomal pseudomolecules and covers over 98% of the gene space.
  • A comparative analysis with Brassica genomes shows that the radish genome evolved from a hexaploid ancestor and displays traits from both the A/C and B genomes.
  • The findings highlight radish's evolutionary background and contribute to the understanding of mesohexaploid genomes in the Brassiceae tribe.
View Article and Find Full Text PDF

Transcriptional activation of anthocyanin biosynthesis genes in vegetative tissues of monocotyledonous plants is mediated by cooperative activity of one component from each of the following two transcription factor families: MYB encoded by PURPLE PLANT1/COLORED ALEURONE1 (PL1/C1), and basic helix-loop-helix (bHLH) encoded by RED/BOOSTER (R1/B1). In the present study, putative PL cDNA was cloned from the wheat (Triticum aestivum) cultivar Iksan370, which preferentially expresses anthocyanins in coleoptiles. Phylogenetic tree analysis of deduced amino acid sequences showed that a putative TaPL1 is highly homologous to barley (Hordeum vulgare) HvPL1, but is distinct from wheat TaC1.

View Article and Find Full Text PDF
Article Synopsis
  • Cyanobacteriochromes (CBCRs) are specialized photoproteins in cyanobacteria that can sense a range of near-UV and visible light, showing a connection to plant phytochromes.
  • This study focused on the genome sequencing of Microcoleus B353, a mat-forming cyanobacterium, revealing two phytochromes and seven CBCRs, along with various GAF domain proteins that interact with bilin chromophores.
  • The findings indicate that Microcoleus B353 has a unique set of CBCRs, primarily tuned to detect near-UV and violet light, which may help it adapt to high-light environments where it thrives.
View Article and Find Full Text PDF

A putative RNA-binding protein with a single RNA Recognition Motif (At3G63450) is involved in anthocyanin biosynthesis via its ability to modulate the transcript level of a major positive regulator PAP1 in Arabidopsis. The R2R3 MYB-activator production of anthocyanin pigment 1 (PAP1)/MYB75 plays a major role in anthocyanin biosynthesis in Arabidopsis in combination with one of three bHLH activators including transparent test 8 (TT8), enhancer of glabra3 (EGL3), glabra3 (GL3), and the WD-repeat transcription factor transparent testa 1 (TTG1), forming ternary MYB-basic HLH-WD40 complexes. Transcriptional activation of PAP1 expression is largely triggered by changes in light color and intensity, temperature fluctuations, nutrient status, and sugar and hormone treatments.

View Article and Find Full Text PDF
Article Synopsis
  • The study focuses on hot pepper (Capsicum annuum), a widely cultivated spice, detailing its whole-genome sequencing and assembly, revealing it has a genome four times larger than tomato.
  • Researchers also analyzed two cultivated pepper varieties and a wild type (Capsicum chinense), uncovering key genetic elements influencing capsaicinoid (spicy compound) production.
  • The findings emphasize the role of gene expression changes and ripening processes that can enhance the nutritional and medicinal properties of hot peppers.
View Article and Find Full Text PDF

Several positive transcription factors regulate Arabidopsis anthocyanin biosynthesis. HY5, a component of light-signaling pathways, and PAP1, an R2R3-MYB transcription factor, share common regulatory targets on anthocyanin biosynthesis genes. The epistatic interactions between the two transcription factors are currently unknown.

View Article and Find Full Text PDF

The Bruno RNA-binding protein (RBP) has been shown to initially repress the translation of oskar mRNA during Drosophila oogenesis and later to be involved in a broad range of RNA regulation. Here, we show that homologous constitutive overexpression of each of two Arabidopsis thaliana Bruno-like genes, AtBRN1 and AtBRN2, delayed the flowering time, while the atbrn1 atbrn2-3 double mutant flowered early and exhibited increased expression of APETALA1 (AP1) and LEAFY (LFY) transcripts. Crossing of 35S::AtBRNs with SOC1 101-D plants demonstrated that 35S::AtBRNs suppress an early-flowering phenotype of SOC1 101-D in which the coding sequence (CDS) with the 3' UTR of SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 (SOC1) gene is overexpressed.

View Article and Find Full Text PDF

Sugars enhance light signaling-induced anthocyanin accumulation in Arabidopsis seedlings via differential regulation of several positive and negative transcription factors. Ca(2+) plays a role as a second messenger in sugar signaling in grape and wheat. However, whether anthocyanin pigmentation is modulated by changes in intracellular Ca(2+) level in Arabidopsis is not known.

View Article and Find Full Text PDF