Publications by authors named "Samuel Abalde"

Xenacoelomorpha are mostly microscopic, morphologically simple worms, lacking many structures typical of other bilaterians. Xenacoelomorphs -which include three main groups: Acoela, Nemertodermatida, and Xenoturbella- have been proposed to be an early diverging Bilateria, sister to protostomes and deuterostomes, but other phylogenomic analyses have recovered this clade nested within the deuterostomes, as sister to Ambulacraria. The position of Xenacoelomorpha within the metazoan tree has understandably attracted a lot of attention, overshadowing the study of phylogenetic relationships within this group.

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Xenacoelomorpha is a marine clade of microscopic worms that is an important model system for understanding the evolution of key bilaterian novelties, such as the excretory system. Nevertheless, Xenacoelomorpha genomics has been restricted to a few species that either can be cultured in the lab or are centimetres long. Thus far, no genomes are available for Nemertodermatida, one of the group's main clades and whose origin has been dated more than 400 million years ago.

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Article Synopsis
  • - The Mediterranean cone snail, Lautoconus ventricosus, has been thought to be a single species across the Mediterranean Sea and nearby Atlantic coasts, but a study involving 245 samples across 75 locations suggests otherwise.
  • - Genetic analysis revealed six distinct clades that could represent separate species, although different methods produced varying results, pointing to complexities like incomplete lineage sorting and introgression between clades.
  • - The study indicates the existence of at least three distinct species based on genetic data, with significant distribution patterns separating them, and emphasizes the need for combined approaches in studying species diversity, integrating genetic, morphological, and ecological data.
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Changes in life history traits are often considered speciation triggers and can have dramatic effects on the evolutionary history of a lineage. Here, we examine the consequences of changes in two life history traits, host-type and phoresy, in the hypermetamorphic blister beetles, Meloidae. Subfamilies Nemognathinae and Meloinae exhibit a complex life cycle involving multiple metamorphoses and parasitoidism.

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Venoms are complex mixtures of proteins that have evolved repeatedly in the animal kingdom. Cone snail venoms represent one of the best studied venom systems. In nature, this venom can be dynamically adjusted depending on its final purpose, whether to deter predators or hunt prey.

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Background: Venoms are deadly weapons to subdue prey or deter predators that have evolved independently in many animal lineages. The genomes of venomous animals are essential to understand the evolutionary mechanisms involved in the origin and diversification of venoms.

Results: Here, we report the chromosome-level genome of the venomous Mediterranean cone snail, Lautoconus ventricosus (Caenogastropoda: Conidae).

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The transcriptomes of the venom glands of 13 closely related species of vermivorous cones endemic to West Africa from genera and were sequenced and venom repertoires compared within a phylogenetic framework using one species as outgroup. The total number of conotoxin precursors per species varied between 108 and 221. Individuals of the same species shared about one-fourth of the total conotoxin precursors.

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The transcriptomes of the venom glands of two individuals of the magician's cone, , from Okinawa (Japan) were sequenced, assembled, and annotated. In addition, RNA-seq raw reads available at the SRA database from one additional specimen of from the Philippines were also assembled and annotated. The total numbers of identified conotoxin precursors and hormones per specimen were 118, 112, and 93.

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The transcriptome of the venom duct of the Atlantic piscivorous cone species Chelyconus ermineus (Born, 1778) was determined. The venom repertoire of this species includes at least 378 conotoxin precursors, which could be ascribed to 33 known and 22 new (unassigned) protein superfamilies, respectively. Most abundant superfamilies were T, W, O1, M, O2, and Z, accounting for 57% of all detected diversity.

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Article Synopsis
  • Cone snails are notable for their ecological diversity and toxicity, but current species identification relies heavily on shell morphology, which can be misleading due to similar traits across different species.
  • This study focuses on the phylogeny of cone snails from the Cabo Verde archipelago using mitochondrial genomes, revealing two main clades: one that includes Kalloconus and Trovaoconus, and another containing a paraphyletic Lautoconus.
  • The findings suggest low genetic divergence between Kalloconus and island species of Trovaoconus, indicating the potential for synonymizing the two, while also highlighting that Lautoconus is not a single lineage but paraphyletic.
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  • Researchers sequenced mitochondrial genomes from 17 specimens, representing 11 endemic species, allowing for a better understanding of their genetic makeup and evolutionary history.
  • The study revealed three major lineages linked to historical environmental changes, suggesting that certain physical traits may correlate with dietary specialization, which could impact taxonomic classification and conservation efforts.
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Article Synopsis
  • * Advances in affordable high-throughput sequencing in the last decade have significantly improved our understanding of marine biodiversity, highlighting both microbial life and a variety of plant and animal species.
  • * This review focuses on the applications of genomics for studying marine life, covering areas like evolutionary biology and commercially important species, and provides contextual examples of the current state of marine genomics research.
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