Publications by authors named "Sampathkumar A"

Article Synopsis
  • An angiosperm seed is made up of the embryo, endosperm, and maternal seed coat, all of which interact to ensure proper development after fertilization.
  • Auxin from the endosperm triggers the formation of the seed coat, while the seed coat communicates back with the endosperm to enhance its growth through brassinosteroids (BR).
  • BR influences the structure and properties of the seed coat, which in turn affects how quickly the endosperm can grow, independent of when it actually forms.
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Division plane orientation contributes to cell shape and topological organization, playing a key role in morphogenesis, but the precise physical and molecular mechanism influencing these processes remains largely obscure in plants. In particular, it is less clear how the placement of the new walls occurs in relation to the walls of neighboring cells. Here, we show that genetic perturbation of the actin cytoskeleton results in more rectangular cell shapes and higher incidences of four-way junctions, perturbing the global topology of cells in the shoot apical meristem of Arabidopsis thaliana.

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Duplicated genes are thought to follow one of three evolutionary trajectories that resolve their redundancy: neofunctionalization, subfunctionalization, or pseudogenization. Differences in expression patterns have been documented for many duplicated gene pairs and interpreted as evidence of subfunctionalization and a loss of redundancy. However, little is known about the functional impact of such differences and about their molecular basis.

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DNA double-strand breaks (DSBs) activate DNA damage responses (DDRs) in both mitotic and meiotic cells. A single-stranded DNA (ssDNA) binding protein, Replication protein-A (RPA) binds to the ssDNA formed at DSBs to activate ATR/Mec1 kinase for the response. Meiotic DSBs induce homologous recombination monitored by a meiotic DDR called the recombination checkpoint that blocks the pachytene exit in meiotic prophase I.

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Postharvest physiological deterioration (PPD) reduces the availability and economic value of fresh produces, resulting in the waste of agricultural products and becoming a worldwide problem. Therefore, many studies have been carried out at the anatomical structural, physiological and biochemical levels and molecular levels of PPD of fresh produces to seek ways to manage the postharvest quality of fresh produce. The cell wall is the outermost structure of a plant cell and as such represents the first barrier to prevent external microorganisms and other injuries.

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Subzero temperatures are often lethal to plants. Many temperate herbaceous plants have a cold acclimation mechanism that allows them to sense a drop in temperature and prepare for freezing stress through accumulation of soluble sugars and cryoprotective proteins. As ice formation primarily occurs in the apoplast (the cell wall space), cell wall functional properties are important for plant freezing tolerance.

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Effective utilization and conservation of freshwater is a global concern due to the rapid population growth and industrial usage. To address this challenge, various approaches have been developed and implemented to convert brackish water into freshwater and meet the global water demand. This study introduces hexagram-shaped aluminum fins attached to a powder-coated basin to improve the freshwater production rate of stepped solar still.

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Women's most frequent type of cancer is breast cancer, second only to lung cancer. This paper summarizes changes in genomics and epigenetics and incremental biological activities. A tumour develops through a series of phases involving a separate abnormal gene.

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Developmental transitions, occurring throughout the life cycle of plants, require precise regulation of metabolic processes to generate the energy and resources necessary for the committed growth processes. In parallel, the establishment of new cells, tissues, and even organs, alongside their differentiation provoke profound changes in metabolism. It is increasingly being recognized that there is a certain degree of feedback regulation between the components and products of metabolic pathways and developmental regulators.

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Article Synopsis
  • - The study investigates how different light conditions affect ascorbate levels in Arabidopsis plants, focusing on a genetic analysis of 315 plant accessions to understand their responses to high light (HL) stress.
  • - Researchers identified significant genetic markers for ascorbate levels on chromosome 2 and found that the proteins PLPA and PLPB are associated with the regulation of ascorbate, particularly in the presence of blue light.
  • - The findings indicate that PLP significantly influences ascorbate elevation during HL acclimation, mainly by reducing its inhibitory effect on the VTC2 protein when exposed to blue light, suggesting a complex interaction among various environmental conditions and genetic factors.
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All plant cells are encased by walls, which provide structural support and control their morphology. How plant cells regulate the deposition of the wall to generate complex shapes is a topic of ongoing research. Scientists have identified several model systems, the epidermal pavement cells of cotyledons and leaves being an ideal platform to study the formation of complex cell shapes.

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Article Synopsis
  • The study explores the role of 3',5'-cAMP, a signaling molecule not well characterized in plants, using a technique called thermal proteome profiling (TPP) to identify its protein targets.
  • Through this analysis, 51 proteins showed significant changes in thermal stability when interacting with 3',5'-cAMP, including those involved in metabolism and plant growth regulation.
  • The research indicates that 3',5'-cAMP affects the organization of the actin cytoskeleton in plants, with potential indirect mechanisms of action rather than a direct interaction with actin itself.
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The cell wall is one of the defining features of plants, controlling cell shape, regulating growth dynamics and hydraulic conductivity, as well as mediating plants interactions with both the external and internal environments. Here we report that a putative mechanosensitive Cys-protease DEFECTIVE KERNEL1 (DEK1) influences the mechanical properties of primary cell walls and regulation of cellulose synthesis. Our results indicate that DEK1 is an important regulator of cellulose synthesis in epidermal tissue of cotyledons during early post-embryonic development.

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Mechanical forces control development in plants and animals, acting as cues in pattern formation and as the driving force of morphogenesis. In mammalian cells, molecular assemblies residing at the interface of the cell membrane and the extracellular matrix play an important role in perceiving and transmitting external mechanical signals to trigger physiological responses. Similar processes occur in plants, but there is little understanding of the molecular mechanisms and their genetic basis.

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Cell division and the resulting changes to the cell organization affect the shape and functionality of all tissues. Thus, understanding the determinants of the tissue-wide changes imposed by cell division is a key question in developmental biology. Here, we use a network representation of live cell imaging data from shoot apical meristems (SAMs) in Arabidopsis thaliana to predict cell division events and their consequences at the tissue level.

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The conversion of light energy to chemical energy by photosynthesis requires the concerted action of large protein complexes in the thylakoid membrane. Recent work has provided fundamental insights into the three-dimensional structure of these complexes, but how they are assembled from hundreds of parts remains poorly understood. Particularly little is known about the biogenesis of the cytochrome bf complex (Cytbf), the redox-coupling complex that interconnects the two photosystems.

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Water scarcity necessitates a cost-effective and productive solution. This study focused to enhance the productivity of single slope solar still by incorporating the better weight of palm flower powder (micro-sized) in the basin and micro phase change material heat storage bed under the basin. In this aspect, the different quantity of palm powder weights such as 10, 30, 50, 70, 100, 120 and 150 g in the basin was experimentally examined.

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In recent times, the Internet of Medical Things (IoMT) is a new loomed technology, which has been deliberated as a promising technology designed for various and broadly connected networks. In an intelligent healthcare system, the framework of IoMT observes the health circumstances of the patients dynamically and responds to backings their needs, which helps detect the symptoms of critical rare body conditions based on the data collected. Metaheuristic algorithms have proven effective, robust, and efficient in deciphering real-world optimization, clustering, forecasting, classification, and other engineering problems.

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Plants evolved efficient multifaceted acclimation strategies to cope with low temperatures. Chloroplasts respond to temperature stimuli and participate in temperature sensing and acclimation. However, very little is known about the involvement of chloroplast genes and their expression in plant chilling tolerance.

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Article Synopsis
  • The RNA degradation product 2',3'-cyclic adenosine monophosphate (2',3'-cAMP) has been linked to plant stress signaling, showing increased levels during conditions like wounding and heat.
  • Research using a multi-omics approach on Arabidopsis revealed that 2',3'-cAMP is metabolized into adenosine, indicating a potential similar pathway in plants as seen in human cells.
  • The study found that 2',3'-cAMP treatment alters numerous transcripts, proteins, and metabolites associated with stress responses, and influences the behavior of processing bodies, suggesting its significant role in plant responses to stress.
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Article Synopsis
  • - LEA proteins, particularly the LEA_4 group, play a key role in helping plants survive stress, especially in dry seeds of Arabidopsis, where many of these proteins are actively expressed.
  • - Using fluorescence techniques, researchers discovered that LEA_4 proteins are found in various parts of the cell, including the endoplasmic reticulum, nucleus, and mitochondria, with some proteins showing specific localization patterns influenced by hydration levels.
  • - Studies showed that certain LEA_4 proteins can form homodimers and heterodimers, with some creating liquid-like droplets, indicating that liquid-liquid phase separation might be crucial for their biological functions.
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