Publications by authors named "Samia Demachki"

Emerging deep learning-based applications in precision medicine include computational histopathological analysis. However, there is a lack of the required training image datasets to generate classification and detection models. This phenomenon occurs mainly due to human factors that make it difficult to obtain well-annotated data.

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  • This study investigates the impact of four specific genes (FAM49B, FAM84B, GSDMC, and miR-5194) located in the frequently altered 8q24.21 region on gastric cancer (GC), aiming to shed light on gene expression and copy number variations (CNV) related to GC.
  • Analysis involved comparing gene expression in tumoral and adjacent non-tumoral gastric tissues from 51 to 85 cancer patients against control samples from non-cancer individuals, revealing that three of the four genes were upregulated in cancerous tissues.
  • The findings suggest that higher expression levels of FAM49B, GSDMC, and miR-
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Circular RNAs (circRNAs) are a class of long non-coding RNAs that have the ability to sponge RNA-Binding Proteins (RBPs). Triple-negative breast cancer (TNBC) has very aggressive behavior and poor prognosis for the patient. Here, we aimed to characterize the global expression profile of circRNAs in TNBC, in order to identify potential risk biomarkers.

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Background: Prostate cancer represents 3.8% of cancer deaths worldwide. For most prostate cancer cells to grow, androgens need to bind to a cellular protein called the androgen receptor (AR).

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Ocular infection with causes toxoplasmosis in mice. However, following ocular infection with tachyzoites, the cause of the accompanying progressive changes in hippocampal-dependent tasks, and their relationship with the morphology and number of microglia, is less well understood. Here, in 6-month-old, female BALB/c mice, 5 μl of a suspension containing 48.

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Gastric cancer (GC) is the fifth most common type of cancer and the third leading cause of cancer death in the world. It is a disease that encompasses a variety of molecular alterations, including in non-coding RNAs such as circular RNAs (circRNAs). In the present study, we investigated hsa_circ_0000211, hsa_circ_0000284, hsa_circ_0000524, hsa_circ_0001136 and hsa_circ_0004771 expression profiles using RT-qPCR in 71 gastric tissue samples from GC patients (tumor and tumor-adjacent samples) and volunteers without cancer.

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Purpose: To describe a case of a patient presenting with acquired acoria and iris pearls, a rare eye manifestation and pathognomonic finding for leprosy; to reinforce clinical, histopathological, and therapeutic aspects of ocular involvement in leprosy.

Methods: Case report.

Case Description: A 62-year-old male presenting with acquired acoria and iris pearls in both eyes due to leprosy also had anterior uveitis and cataract.

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  • - Identifying a specific microbiome pattern linked to gastric cancer (GC) is complex due to variations among populations, clinical scenarios, and different metagenomic methods, with H. pylori being the key microorganism involved in the early stages of cancer development.
  • - While H. pylori is central to gastric carcinogenesis, other non-H. pylori microbiome patterns emerge later in the process; however, most findings are inconsistent and suffer from issues like contamination, small sample sizes, and lack of standardized analysis.
  • - A comprehensive analysis of publicly available metagenomic data revealed that Helicobacter and Prevotella are prominent genera across various clinical scenarios, suggesting specific bacterial groups and their metabolic pathways could provide insights for future interventions
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Gastric cancer (GC) is one of the leading types of fatal cancer worldwide. Epigenetic manipulation of cancer cells is a useful tool to better understand gene expression regulatory mechanisms and contributes to the discovery of novel biomarkers. Our research group recently reported a list of 83 genes that are potentially modulated by DNA methylation in GC cell lines.

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Background: The forkhead box protein 3 (FOXP3) transcription factor is one of the main markers of immunological suppression in different pathological profiles, and the presence of polymorphic variants may alter the gene expression of this factor. Despite descriptions of an association between the presence of the rs2232365 polymorphism and chronic diseases, the role of the sex variant in this context has not yet been elucidated, as the FOXP3 gene is located on the human sex chromosome X.

Results: To contribute to this topic, 323 women and 373 men were enrolled in the study, of which 101 were diagnosed with chronic viral liver diseases (39 women and 62 men), 67 with HTLV-1 infection (44 women and 23 men), 230 with coronary artery disease (91 women and 139 men) and 298 healthy and uninfected blood donors (149 women and men).

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  • - Gastric cancer (GC) is a significant global health issue, and research into its molecular mechanisms aims to discover new biomarkers for early diagnosis.
  • - The study utilized small-RNA sequencing to examine the expression of PIWI-interacting RNAs (piRNAs) in gastric cancer patients, identifying 698 piRNAs with 14 being differentially expressed between cancerous and non-cancerous tissues.
  • - Three specific piRNAs (piR-48966*, piR-49145, piR-31335*) were found to be potential risk biomarkers for gastric cancer, highlighting the need to reconsider adjacent tissues in research as they undergo molecular changes related to the disease.
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Background: adoptive immunotherapy is a promising cancer therapy. Immune cells are capable of recognizing and destroying cancer cells and represent a powerful strategy, however, this approach remains technically complicated, due to the need to select and isolate immune cells from these, present cancer antigens to those cells, expanding and reinjecting them. Lymph nodes recovered during gastric cancer surgery may represent an option for immunotherapy, since they harbor an enormous amount of immune cells, which have already been presented to cancer antigens.

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Introduction: Frantz's Tumor or Solid Pseudopapillary Neoplasm (SPN) is rare with a solid-cystic pattern, and most common in young women.

Presentation Of Case: This study based on guidelines for case reports (SCARE) reports a case of SPN in a teenager aged 13 years at the diagnosis time, attended at a teaching public hospital in Brazil, which evolved into liver metastases. Clinical, laboratory, therapeutic and imaging data were collected from the physical chart and analyzed in light of current publications on the topic.

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Gastric cancer (GC) is the third leading cause of cancer-related death worldwide. Very few therapeutic options are currently available in this neoplasia. The use of 5-Aza-2'-deoxycytidine (5-AZAdC) was approved for the treatment of myelodysplastic syndromes, and this drug can treat solid tumours at low doses.

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Backgrounds: Neural growth factor (NGF) is a neurotrophin that can interact with the p75 receptor and initiate a cascade of reactions that determines cell survival or death, and both are associated with the physiology of liver tissue. Single nucleotide polymorphisms (SNPs) in the NGF and p75 genes have been investigated in different pathologies; however, there are no studies that have analyzed their biological roles in the hepatic microenvironment. In the present study, we evaluated the impact of SNPs in these genes on the maintenance of liver function at different stages of inflammation and fibrosis in patients with chronic viral liver disease in the Brazilian Amazon.

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Contact with HCV triggers the activation of innate mechanisms responsible for initial infection control. Host cells expressed extra- or intracellularly molecules that promote recognition of pathogen-associated molecular patterns (PAMPs). Toll-like receptor 4 (TLR4), mannose-binding lectin (MBL) and C-reactive protein (CRP) are molecules available for HCV PAMP recognition.

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  • Mitochondria are crucial for cell function, and changes in their genetic material can lead to dysfunction and possibly cancer development, particularly gastric cancer (GC).
  • In a study of GC patients from the Amazon region, researchers found that tumor samples had significantly more genetic variants compared to both the internal controls (healthy tissue from the same patient) and external controls (healthy individuals).
  • The research also discovered that specific mitochondrial regions were more affected in tumors and highlighted a potential link between Native American ancestry and the risk of developing gastric cancer. It represents the first comprehensive analysis of mitochondrial genomes related to GC in Brazil.
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  • Gastric cancer remains a major health concern, ranking among the top five cancers worldwide, and third in cancer-related deaths, with variations in incidence and mortality rates across different regions in Brazil from 1990 to 2012.
  • The study analyzed over 33,000 gastric cancer cases and approximately 23,000 deaths using data from cancer registries and mortality databases, revealing the highest incidence rates in Belem, while trends indicated a decreasing incidence in Sao Paulo and Fortaleza, but an increase for women in Belem and Fortaleza.
  • Overall, while Brazil is witnessing a decrease in gastric cancer mortality rates, the Northeast region is showing troubling trends with increasing mortality, emphasizing the need for updated research and
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Background: MicroRNAs (miRNAs) play an important role in gastric carcinogenesis and have been associated with gastric field cancerization; however, their role is not fully understood in this process. We performed the miRNome sequencing of non-cancerous, adjacent to tumor and gastric cancer samples to understand the involvement of these small RNAs in gastric field cancerization.

Methods: We analyzed samples of patients without cancer as control (non-cancerous gastric samples) and adjacent to cancer and gastric cancer paired samples, and considered miRNAs with |log()| > 2 and < 0.

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Although the small bowel is a vast organ with a highly proliferative epithelium, the incidence of small bowel cancers is surprisingly low. Many factors could be involved in this unexpected cancer incidence, including difficult access to the exploration of the small bowel mucosa, which might lead to missed diagnoses of non-obstructive and non-bleeding small tumours. Moreover, possible factors that influence the low incidence include more efficient machinery of DNA replication and DNA repair enzymes, peculiarities in microbiota components, competence of the immune system, and the speed of intestinal transit.

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 To analyze gene expression and copy number of five miRNAs (, , , and ) localized in this chromosome region in gastric cancer (GC).  65 paired neoplastic and non-neoplastic specimens collected from GC patients and 20 non-neoplastic gastric tissues from cancer-free individuals were included in this study. The expression levels of the five miRNAs were accessed by real time qPCR and were correlated.

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The biological role of microRNAs (miRNAs) in field cancerization is unknown. To investigate the involvement of miRNAs in gastric field cancerization, we evaluated the expression profile of ten miRNAs and their diagnostic value. We used three groups of FFPE gastric samples: non-cancer (NC), cancer adjacent (ADJ) and gastric cancer (GC).

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The search for cancer biomarkers is frequently based on comparisons between tumors and adjacent-to-tumor samples. However, even after histological confirmation of been free of cancer cells, these adjacent-to-tumor samples might harbor molecular alterations which are not sufficient to cause them to look like cancer, but can differentiate these cells from normal cells. When comparing them, potential biomarkers are missed, and mainly the opportunity of finding initial aberrations presents in both tumors and adjacent samples, but not in true normal samples from non-cancer patients, resulting in misinterpretations about the carcinogenic process.

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The transcription factor FOXP3 is an essential marker of the development and activation of regulatory T cells (Tregs), which are cells specialized in the regulation and normal tolerance of the immune response. In the context of chronic viral liver diseases, Tregs participate in the maintenance of infections by promoting histopathological control and favor the immune escape of viral agents by suppressing the antiviral response. Single nucleotide polymorphisms (SNPs) may influence the function of FOXP3 in a number of pathological conditions.

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Gastric carcinoma (GC) is one of the most aggressive cancers and the second leading cause of cancer death in the world. According to the Lauren classification, this adenocarcinoma is divided into two subtypes, intestinal and diffuse, which differ in their clinical, epidemiological and molecular features. Several studies have attempted to delineate the molecular signature of gastric cancer to develop new and non-invasive screening tests that improve diagnosis and lead to new treatment strategies.

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