Publications by authors named "Samad Amini Bavil Olyaee"

Infection by hepatitis B virus (HBV) is responsible for approximately 296 million chronic cases of hepatitis B, and roughly 880,000 deaths annually. The global burden of HBV is distributed unevenly, largely owing to the heterogeneous geographic distribution of its subtypes, each of which demonstrates different severity and responsiveness to antiviral therapy. It is therefore crucial to the global public health response to HBV that the spatiotemporal spread of each genotype is well characterized.

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  • Lung mast cells play a key role in protecting the body but their overactivation can lead to chronic issues like asthma.
  • The study reveals that a lung-specific protein called MCEMP1 acts as an adaptor for the KIT protein, enhancing mast cell growth through its interaction with stem cell factor (SCF).
  • Mice lacking MCEMP1 show decreased mast cell growth and reduced inflammation in asthma models, highlighting its importance in lung mast cell proliferation and potential asthma treatment.
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Hepatitis B is a potentially life-threatening liver infection caused by the hepatitis B virus (HBV). HBV-D1 is the dominant subgenotype in the Mediterranean basin, Eastern Europe, and Asia. However, little is currently known about its evolutionary history and spatio-temporal dynamics.

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In the lack of an effective vaccine and antiviral treatment, convalescent plasma (CP) has been a promising therapeutic approach in past pandemics. Accumulating evidence in the current severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic corroborates the safety of CP therapy and preliminary data underline the potential efficacy. Recently, the Food and Drug Administration (FDA) permitted CP therapy for coronavirus disease 2019 (COVID-19) patients under the emergency use authorization, albeit additional clinical studies are still needed.

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  • People from low-to-middle income countries have been migrating to Western Europe significantly, with first-time asylum applications rising from 290,000 in 2011 to over 1.3 million in 2015.
  • The World Health Organization adopted the Global Health Sector Strategy on Viral Hepatitis during this peak migration period, highlighting the public health importance of hepatitis B virus (HBV), which is prevalent among arriving refugees.
  • The authors argue that the influx of migrants from regions with high HBV prevalence presents a unique opportunity for host countries to enhance their HBV screening, vaccination, and treatment infrastructure to help achieve viral hepatitis elimination targets.
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Fulminant hepatitis among different clinical outcomes of hepatitis B virus infection is very rare and manifests high mortality rate, however it has not been investigated in Belgian inhabitants yet. In the frame of a retrospective study between 1995 and 2010, 80 serum samples (in some cases serial samples) archived in Biobank, were collected from 24 patients who had clinically developed fulminant infection of hepatitis B virus. In total, 33 hepatitis B virus (HBV) strains (31 full-length genome and 2 partial viral genes) of different HBV genotypes and subgenotypes including A2, B2, D1, D2, D3 and E, were amplified, sequenced and phylogenetically analyzed.

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  • HBV remains a significant public health challenge despite the development of a vaccine, with its high genetic diversity and the host immune response contributing to the virus's evolution and varying clinical outcomes.
  • Fulminant hepatitis B presents the highest mortality rate among HBV infections, with about 1% of acutely infected patients developing this severe form, which has a mortality rate of around 70%.
  • Research indicates that specific mutations in HBV's genome, particularly in regulatory regions and immune epitopes, promote aggressive strains of the virus and enhance its ability to evade the immune system, leading to a more severe disease progression.
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  • Hepatitis B virus (HBV) consists of eight genotypes, with genotype D being the most globally prevalent; this study focuses on non-D1 strains found in Iranian patients.
  • Researchers sequenced complete genomes from nine Iranian HBV carriers, identifying four D2 and five D3 subgenotypes, with D2 strains related to those from Lebanon and Syria.
  • The findings indicate that Iranian D2 and D3 strains likely originated from separate introductions from surrounding regions, highlighting the need to study these strains' mutations to understand their clinical implications better.
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The TRIpartite Motif (TRIM) family of RING-domain-containing proteins participate in a variety of cellular functions. The β-transducin repeat-containing protein (β-TrCP), a component of the Skp-Cullin-F-box-containing (SCF) E3 ubiquitin ligase complex, recognizes the NF-κB inhibitor IκBα and precursor p100 for proteasomal degradation and processing, respectively. β-TrCP thus plays a critical role in both canonical and non-canonical NF-κB activation.

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The clinical course of infections with the hepatitis B virus (HBV) substantially varies between individuals, as a consequence of a complex interplay between viral, host, environmental and other factors. Due to the high genetic variability of HBV, the virus can be categorized into different HBV genotypes and subgenotypes, which considerably differ with respect to geographical distribution, transmission routes, disease progression, responses to antiviral therapy or vaccination, and clinical outcome measures such as cirrhosis or hepatocellular carcinoma. However, HBV (sub)genotyping has caused some controversies in the past due to misclassifications and incorrect interpretations of different genotyping methods.

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Enveloped viruses exploit the endomembrane system to enter host cells. Through a cascade of membrane-trafficking events, virus-bearing vesicles fuse with acidic endosomes and/or lysosomes mediated by SNAREs triggering viral fusion. However, the molecular mechanisms underlying this process remain elusive.

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Iran is a large country that covers the northern coast of the Persian Gulf. Iranian residents of this coastal region interact closely with people from neighboring countries because of historical and cultural relationships, as well as economic activities. In addition, the inhabitants of this border region have experienced several wars, which have affected public health infrastructures.

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The genetic diversity of the HBV S gene has a significant impact on the prophylaxis and treatment of hepatitis B infection. The effect of selective pressure on this genetic alteration has not yet been studied in Iranian blood donors. To explore HBV evolution and to analyze the effects and patterns of hepatitis B surface antigen (HBsAg) mutations on blood screening assays, 358 Iranian blood donors diagnosed as asymptomatic HBV carriers were enrolled in this nationwide study.

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Vesicle-membrane-protein-associated protein A (VAPA) and oxysterol-binding protein (OSBP) regulate intracellular cholesterol homeostasis, which is required for many virus infections. During entry, viruses or virus-containing vesicles can fuse with endosomal membranes to mediate the cytosolic release of virions, and alterations in endosomal cholesterol can inhibit this invasion step. We show that the antiviral effector protein interferon-inducible transmembrane protein 3 (IFITM3) interacts with VAPA and prevents its association with OSBP, thereby disrupting intracellular cholesterol homeostasis and inhibiting viral entry.

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  • The study characterized Hepatitis B virus (HBV) isolates from Iranian patients, analyzing 81 complete genomes categorized into inactive carriers, chronic hepatitis patients, and liver cirrhosis patients.
  • Iranian patients were predominantly infected with HBV genotype D1, with the common subtype being ayw2, along with observed mutations like sP120S in the virus surface antigen, particularly in older individuals.
  • A significant number of patients were HBeAg negative, most carrying precore mutant variants, which may increase the risk of severe liver disease; additionally, about 30% of lamivudine-treated patients developed drug resistance mutations after one year.
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Hepatitis B virus (HBV) and human immunodeficiency virus (HIV) have similar transmission routes, implying that patients infected with HIV are at particular risk for HBV infection. Patients who are co-infected with HIV and HBV progress more rapidly to end-stage liver disease and different HBV genotypes may have a distinct impact on disease progression. One hundred ninety-one anti-HBc-positive sera from Belgian patients co-infected with HIV and HBV were collected during 1998-2008.

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Background: Recently, several novel hepatitis B virus (HBV) subgenotypes have been introduced that do not meet proper definition of "subgenotypes". In particular for HBV genotype A, such novel subgenotypes have been reported.

Objective: To comprehensively reanalyse all HBV subgenotypes A, and to propose a novel, consistent alternative for HBV classification.

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  • * Phylogenetic analysis revealed genetic diversity within these HBV strains, including a few unusual variants and mutations particularly noted in patients with chronic hepatitis B and cirrhosis.
  • * High mutation rates were found in genotype D, especially in patients on lamivudine therapy, hinting at the issue of drug resistance among nearly half of those treated for over a year.
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Immune escape variants of the hepatitis B virus (HBV) represent an emerging clinical challenge, because they can be associated with vaccine escape, HBV reactivation, and failure of diagnostic tests. Recent data suggest a preferential selection of immune escape mutants in distinct peripheral blood leukocyte compartments of infected individuals. We therefore systematically analyzed the functional impact of the most prevalent immune escape variants, the sG145R and sP120T mutants, on the viral replication efficacy and antiviral drug susceptibility of common treatment-associated mutants with resistance to lamivudine (LAM) and/or HBeAg negativity.

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