Evaluation of deep learning-based depression detection using medical claims data.

Human accuracy in diagnosing psychiatric disorders is still low. Even though digitizing health care leads to more and more data, the successful adoption of AI-based digital decision support (DDSS) is rare. One reason is that AI algorithms are often not evaluated based on large, real-world data.

Advancing drug-target interaction prediction: a comprehensive graph-based approach integrating knowledge graph embedding and ProtBert pretraining.

Background: The pharmaceutical field faces a significant challenge in validating drug target interactions (DTIs) due to the time and cost involved, leading to only a fraction being experimentally verified. To expedite drug discovery, accurate computational methods are essential for predicting potential interactions. Recently, machine learning techniques, particularly graph-based methods, have gained prominence.

Geoprocess of geospatial urban data in Tallinn, Estonia.

The new digital era brings increasingly massive and complex interdisciplinary projects in various fields. At the same time, the availability of an accurate and reliable database plays a crucial role in achieving project goals. Meanwhile, urban projects and issues usually need to be analyzed to support the objectives of sustainable development of the built environment.

An Alignment-Based Implementation of a Holistic Ontology Integration Method.

Despite the intense research activity in the last two decades, ontology integration still presents a number of challenging issues. As ontologies are continuously growing in number, complexity and size and are adopted within open distributed systems such as the Semantic Web, integration becomes a central problem and has to be addressed in a context of increasing scale and heterogeneity. In this paper, we describe a holistic alignment-based method for customized ontology integration.

Pregnancy Associated Breast Cancer Gene Expressions : New Insights on Their Regulation Based on Rare Correlated Patterns.

Breast-cancer (BC) is the most common invasive cancer in women, with considerable death. Given that, BC is classified as a hormone-dependent cancer, when it collides with pregnancy, different questions may arise for which there are still no convincing answers. To deal with this issue, two new frameworks are proposed within this paper: CoRaM and Dist-CoRaM.

A Novel Computational Approach for Global Alignment for Multiple Biological Networks.

Due to the rapid progress of biological networks for modeling biological systems, a lot of biomolecular networks have been producing more and more protein-protein interaction (PPI) data. Analyzing protein-protein interaction networks aims to find regions of topological and functional (dis)similarities between molecular networks of different species. The study of PPI networks has the potential to teach us as much about life process and diseases at the molecular level.

Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection.

Identification of protein domains is a key step for understanding protein function. Hidden Markov Models (HMMs) have proved to be a powerful tool for this task. The Pfam database notably provides a large collection of HMMs which are widely used for the annotation of proteins in sequenced organisms.

Application of Multi-SOM clustering approach to macrophage gene expression analysis.

The production of increasingly reliable and accessible gene expression data has stimulated the development of computational tools to interpret such data and to organize them efficiently. The clustering techniques are largely recognized as useful exploratory tools for gene expression data analysis. Genes that show similar expression patterns over a wide range of experimental conditions can be clustered together.