New York State Climate Impacts Assessment Chapter 06: Energy.

Energy plays an integral role in New Yorkers' lives. It powers the economy, moves people and goods, keeps homes and workplaces at a livable temperature, and runs critical infrastructure that keeps people healthy and safe. Reliable energy systems are easy to take for granted, but many aspects of these systems are vulnerable to weather and climate hazards.

Radiometric approach for the detection of picophytoplankton assemblages across oceanic fronts.

Cell abundances of Prochlorococcus, Synechococcus, and autotrophic picoeukaryotes were estimated in surface waters using principal component analysis (PCA) of hyperspectral and multispectral remote-sensing reflectance data. This involved the development of models that employed multilinear correlations between cell abundances across the Atlantic Ocean and a combination of PCA scores and sea surface temperatures. The models retrieve high Prochlorococcus abundances in the Equatorial Convergence Zone and show their numerical dominance in oceanic gyres, with decreases in Prochlorococcus abundances towards temperate waters where Synechococcus flourishes, and an emergence of picoeukaryotes in temperate waters.

Validation of the particle size distribution obtained with the laser in-situ scattering and transmission (LISST) meter in flow-through mode.

High spatial and temporal resolution estimates of the particle size distribution (PSD) in the surface ocean can enable improved understanding of biogeochemistry and ecosystem dynamics. Oceanic PSD measurements remain rare due to the time-consuming, manual sampling methods of common particle sizing instruments. Here, we evaluate the utility of measuring particle size data at high spatial resolution with a commercially-available submersible laser diffraction particle sizer (LISST-100X, Sequoia Scientific), operating in an automated mode with continuously flowing seawater.

Airborne and shipborne polarimetric measurements over open ocean and coastal waters: intercomparisons and implications for spaceborne observations.

Comprehensive polarimetric closure is demonstrated using observations from two in-situ polarimeters and Vector Radiative Transfer (VRT) modeling. During the Ship-Aircraft Bio-Optical Research (SABOR) campaign, the novel CCNY HyperSAS-POL polarimeter was mounted on the bow of the R/V Endeavor and acquired hyperspectral measurements from just above the surface of the ocean, while the NASA GISS Research Scanning Polarimeter was deployed onboard the NASA LaRC's King Air UC-12B aircraft. State-of-the-art, ancillary measurements were used to characterize the atmospheric and marine contributions in the VRT model, including those of the High Spectral Resolution Lidar (HSRL), the AErosol RObotic NETwork for Ocean Color (AERONET-OC), a profiling WETLabs ac-9 spectrometer and the Multi-spectral Volume Scattering Meter (MVSM).

Exogenous Auxin Elicits Changes in the Arabidopsis thaliana Root Proteome in a Time-Dependent Manner.

Auxin is involved in many aspects of root development and physiology, including the formation of lateral roots. Improving our understanding of how the auxin response is mediated at the protein level over time can aid in developing a more complete molecular framework of the process. This study evaluates the effects of exogenous auxin treatment on the root proteome after exposure of young seedlings to auxin for 8, 12, and 24 h, a timeframe permitting the initiation and full maturation of individual lateral roots.

Characterizing the phytoplankton soup: pump and plumbing effects on the particle assemblage in underway optical seawater systems.

Many optical and biogeochemical data sets, crucial for algorithm development and satellite data validation, are collected using underway seawater systems over the course of research cruises. Phytoplankton and particle size distribution (PSD) in the ocean is a key measurement, required in oceanographic research and ocean optics. Using a data set collected in the North Atlantic, spanning different oceanic water types, we outline the differences observed in concurrent samples collected from two different flow-through systems: a permanently plumbed science seawater supply with an impeller pump, and an independent system with shorter, clean tubing runs and a diaphragm pump.

Laboratory experiments for inter-comparison of three volume scattering meters to measure angular scattering properties of hydrosols.

Measurements of the volume scattering function (VSF) of hydrosols is of primary importance to investigate the interaction of light with hydrosols and to further interpret in situ and remote sensing data of ocean color. In this paper, a laboratory inter-comparison experiment of three recently developed VSF meters that are able to measure the scattered light for a wide range of scattering angle at 515 nm wavelength is performed using phytoplankton cultures and mineral-like hydrosols. A rigorous measurement protocol was employed to ensure good quality data.

Spectral attenuation and backscattering as indicators of average particle size.

Measurements of the particulate beam attenuation coefficient at multiple wavelengths in the ocean typically exhibit a power law dependence on wavelength, and the slope of that power law has been related to the slope of the particle size distribution (PSD), when assumed to be a power law function of particle size. Recently, spectral backscattering coefficient measurements have been made using sensors deployed at moored observatories, on autonomous underwater vehicles, and even retrieved from space-based measurements of remote sensing reflectance. It has been suggested that these backscattering measurements may also be used to obtain information about the shape of the PSD.

Quantifying reversible oxidation of protein thiols in photosynthetic organisms.

Photosynthetic organisms use dynamic post-translational modifications to survive and adapt, which include reversible oxidative modifications of protein thiols that regulate protein structure, function, and activity. Efforts to quantify thiol modifications on a global scale have relied upon peptide derivatization, typically using isobaric tags such as TMT, ICAT, or iTRAQ that are more expensive, less accurate, and provide less proteome coverage than label-free approaches--suggesting the need for improved experimental designs for studies requiring maximal coverage and precision. Herein, we present the coverage and precision of resin-assisted thiol enrichment coupled to label-free quantitation for the characterization of reversible oxidative modifications on protein thiols.

The global phosphoproteome of Chlamydomonas reinhardtii reveals complex organellar phosphorylation in the flagella and thylakoid membrane.

Chlamydomonas reinhardtii is the most intensively-studied and well-developed model for investigation of a wide-range of microalgal processes ranging from basic development through understanding triacylglycerol production. Although proteomic technologies permit interrogation of these processes at the protein level and efforts to date indicate phosphorylation-based regulation of proteins in C. reinhardtii is essential for its underlying biology, characterization of the C.

Phosphoproteomics in photosynthetic organisms.

As primarily sessile organisms, photosynthetic species survive in dynamic environments by using elegant signaling pathways to manifest molecular responses to extracellular cues. These pathways exploit phosphorylation of specific amino acids (e.g.

Method for estimating mean particle size from high-frequency fluctuations in beam attenuation or scattering measurements.

The ability to estimate mean particle size using simple, low-power optical instruments promises to greatly expand coverage of particle size measurements in the ocean and advance understanding of myriad processes from sediment transport to biological carbon sequestration. Here we present a method for estimating the mean diameter of particles in suspension from high-resolution time series of simple optical measurements, such as beam attenuation or optical backscattering. Validation results from a laboratory clay aggregation experiment show a good fit with independent mean particle diameter estimates in the 10-80 μm diameter range, with relative biases of 17%-38% and relative root mean square errors of 10%-24%.

A case of chronic wasting disease in a captive red deer (Cervus elaphus).

A 22-month-old, female red deer (Cervus elaphus) was submitted to the University of Minnesota Veterinary Diagnostic Laboratory for necropsy and chronic wasting disease (CWD) testing. The deer was found positive for the abnormal prion protein in the obex and the retropharyngeal lymph node by immunohistochemical staining. Microscopic lesions of spongiform encephalopathy and immunohistochemical staining patterns and intensity were similar to those in CWD-positive elk and experimentally infected red deer.

Remote identification of the invasive tunicate Didemnum vexillum using reflectance spectroscopy.

Benthic coverage of the invasive tunicate Didemnum vexillum on Georges Bank is largely unknown. Monitoring of D. vexillum coverage is vital to understanding the impact this invasive species will have on the productive fishing grounds of Georges Bank.

Effects of exogenous auxin and ethylene on the Arabidopsis root proteome.

The phytohormones, auxin and ethylene, together control a wide range of physiological and developmental processes in plants. The lack of knowledge regarding how the underlying signaling processes are reflected at the protein level represents a major gap in understanding phytohormone signaling, including that mediated by crosstalk between auxin and ethylene. Herein is a parallel comparison of the effects of these two hormones on the Arabidopsis root proteome.

Effects of particle aggregation and disaggregation on their inherent optical properties.

In many environments a large portion of particulate material is contained in aggregated particles; however, there is no validated framework to describe how aggregates in the ocean scatter light. Here we present the results of two experiments aiming to expose the role that aggregation plays in determining particle light scattering properties, especially in sediment-dominated coastal waters. First, in situ measurements of particle size distribution (PSD) and beam-attenuation were made with two laser particle sizing instruments (one equipped with a pump to subject the sample to aggregate-breaking shear), and measurements from the two treatments were compared.

Effect of particulate aggregation in aquatic environments on the beam attenuation and its utility as a proxy for particulate mass.

Marine aggregates, agglomerations of particles and dissolved materials, are an important particulate pool in aquatic environments, but their optical properties are not well understood. To improve understanding of the optical properties of aggregates, two related studies are presented. In the first, an in situ manipulation experiment is described, in which beam attenuation of undisturbed and sheared suspensions are compared.

Acceptance angle effects on the beam attenuation in the ocean.

The beam attenuation serves as a proxy for particulate matter and is a key parameter in visibility algorithms for the aquatic environment. It is well known, however, that the beam attenuation is a function of the acceptance angle of the transmissometer used to measure it. Here we compare eight different transmissometers with four different acceptance angles using four different deployment strategies and sites, and find that their mean attenuation values differ markedly and in a consistent way with instrument acceptance angle: smaller acceptance angles provide higher beam attenuation values.

Calibrated near-forward volume scattering function obtained from the LISST particle sizer.

The physical nature of particles, such as size, shape, and composition govern their angular light scattering, which is described by the volume scattering function (VSF). Despite the fact that the VSF is one of the most important inherent optical properties, it has rarely been measured in aquatic environments since no commercial instrument exists to measure the full VSF in the field. The commonly used LISST (Laser In Situ Scattering and Transmissometry) particle sizer (Sequoia Scientific, http://www.

Acute spinal epidural abscess.

Acute spinal epidural abscess is an uncommon disease. Recommended management has been mainly surgical. We recently treated three cases within 4 weeks.

Use of MR imaging to assess results of chemotherapy for Ewing sarcoma.

MR imaging was used to monitor the results of initial chemotherapy of primary Ewing sarcoma of bone. The signal intensities of the soft-tissue and marrow components of the tumor were evaluated on T2-weighted images obtained in 10 patients (nine with responsive tumors) at presentation and during and immediately after completion of two cycles of chemotherapy. MR evidence of marrow and soft-tissue involvement was seen in all tumors at presentation.

Neurologic complications of cardiovascular diseases.

Neurocardiology considers the interrelationships between the circulatory and nervous systems. An appreciation of the anatomic relationship preceded the concept of the clinical relationship of the two systems. Epidemiologic studies link risk factors of the cardiovascular and nervous systems.

[Interval cancers of the breast in general practice--experiences in 10 years of observation].

Of 288 carcinomas, 51 carcinoma developed between two mammography controls during the last 10 years. These were classified according to time, growth, TNM Stage age and histological diagnosis. Various premonitary symptoms are reported which--after retrospective consideration--deserve attention before clinical and radiological manifestation and make short-term controls mandatory Scanning technique using highly sensitive X-ray films is an absolute "must" in present-day diagnostic procedures.